Protein : Qrob_P0032120.2 Q. robur
Protein Identifier  ? Qrob_P0032120.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=3) PTHR22792:SF52 - LA-RELATED PROTEIN 6B (PTHR22792:SF52) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 413  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0030529 ribonucleoprotein complex A macromolecular complex containing both protein and RNA molecules.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101512171 17 411 + 395 Gaps:85 49.30 641 67.41 7e-106 uncharacterized LOC101512171
blastp_kegg lcl|pvu:PHAVU_009G2633000 17 273 + 257 none 55.72 332 85.41 4e-78 hypothetical protein
blastp_kegg lcl|tcc:TCM_021541 13 412 + 400 Gaps:6 65.60 500 78.35 7e-78 RNA-binding protein putative isoform 1
blastp_kegg lcl|pmum:103341341 17 412 + 396 Gaps:7 67.44 473 79.62 2e-77 la-related protein 6B
blastp_kegg lcl|vvi:100259405 17 412 + 396 Gaps:11 69.38 454 78.10 2e-77 uncharacterized LOC100259405
blastp_kegg lcl|gmx:100801679 17 412 + 396 Gaps:13 66.11 475 76.43 3e-76 la-related protein 6-like
blastp_kegg lcl|gmx:100813426 17 412 + 396 Gaps:12 67.24 467 76.75 3e-76 la-related protein 6-like
blastp_kegg lcl|pper:PRUPE_ppa005181mg 17 412 + 396 Gaps:7 67.44 473 78.37 6e-76 hypothetical protein
blastp_kegg lcl|cit:102615388 17 412 + 396 Gaps:18 63.06 536 74.85 7e-75 lateral signaling target protein 2 homolog
blastp_kegg lcl|cic:CICLE_v10019649mg 17 412 + 396 Gaps:19 63.25 536 75.52 2e-74 hypothetical protein
blastp_pdb 1s29_A 21 91 + 71 none 77.17 92 36.62 3e-09 mol:protein length:92 La protein
blastp_uniprot_sprot sp|Q9BRS8|LARP6_HUMAN 3 139 + 137 Gaps:19 31.77 491 25.64 8e-11 La-related protein 6 OS Homo sapiens GN LARP6 PE 1 SV 1
blastp_uniprot_sprot sp|Q7ZWE3|LARP7_DANRE 21 134 + 114 Gaps:1 20.36 555 32.74 8e-11 La-related protein 7 OS Danio rerio GN larp7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8BN59|LARP6_MOUSE 17 139 + 123 Gaps:17 28.46 492 26.43 1e-10 La-related protein 6 OS Mus musculus GN Larp6 PE 1 SV 1
blastp_uniprot_sprot sp|Q28G87|LARP7_XENTR 21 131 + 111 Gaps:1 18.55 593 33.64 2e-10 La-related protein 7 OS Xenopus tropicalis GN larp7 PE 2 SV 1
blastp_uniprot_sprot sp|Q5XI01|LARP7_RAT 21 134 + 114 Gaps:1 19.79 571 33.63 2e-10 La-related protein 7 OS Rattus norvegicus GN Larp7 PE 1 SV 2
blastp_uniprot_sprot sp|Q05CL8|LARP7_MOUSE 21 134 + 114 Gaps:1 19.82 570 33.63 2e-10 La-related protein 7 OS Mus musculus GN Larp7 PE 1 SV 2
blastp_uniprot_sprot sp|Q4R627|LARP7_MACFA 21 134 + 114 Gaps:1 19.45 581 33.63 1e-09 La-related protein 7 OS Macaca fascicularis GN LARP7 PE 2 SV 1
blastp_uniprot_sprot sp|Q4G0J3|LARP7_HUMAN 21 134 + 114 Gaps:1 19.42 582 33.63 1e-09 La-related protein 7 OS Homo sapiens GN LARP7 PE 1 SV 1
blastp_uniprot_sprot sp|P40796|LA_DROME 21 122 + 102 Gaps:7 27.95 390 34.86 4e-08 La protein homolog OS Drosophila melanogaster GN La PE 1 SV 2
blastp_uniprot_sprot sp|P87058|LAH1_SCHPO 17 168 + 152 Gaps:22 44.97 298 33.58 2e-06 La protein homolog OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sla1 PE 1 SV 1
rpsblast_cdd gnl|CDD|153402 21 90 + 70 none 90.91 77 60.00 8e-28 cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins) with differing domain architecture appear to function as RNA-binding proteins in eukaryotic cellular processes.
rpsblast_cdd gnl|CDD|128955 21 91 + 71 Gaps:1 87.50 80 51.43 5e-24 smart00715 LA Domain in the RNA-binding Lupus La protein unknown function.
rpsblast_cdd gnl|CDD|203243 21 76 + 56 Gaps:1 93.22 59 49.09 3e-17 pfam05383 La La domain. This presumed domain is found at the N-terminus of La RNA-binding proteins as well as other proteins. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|153396 21 90 + 70 Gaps:2 90.67 75 48.53 2e-16 cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically the domain co-occurs with an RNA-recognition motif (RRM) and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein LARP3 or Sjoegren syndrome type B antigen SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins) with differing domain architecture appear to function as RNA-binding proteins in eukaryotic cellular processes.
rpsblast_cdd gnl|CDD|153398 21 90 + 70 Gaps:1 90.79 76 43.48 1e-13 cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins) with differing domain architecture appear to function as RNA-binding proteins in eukaryotic cellular processes.
rpsblast_cdd gnl|CDD|153399 21 90 + 70 Gaps:12 91.11 90 35.37 6e-13 cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins) with differing domain architecture appear to function as RNA-binding proteins in eukaryotic cellular processes.
rpsblast_cdd gnl|CDD|153397 21 90 + 70 Gaps:3 86.59 82 40.85 2e-09 cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein LARP3 or Sjoegren syndrome type B antigen (SS-B).
rpsblast_cdd gnl|CDD|153400 21 89 + 69 Gaps:4 89.33 75 44.78 2e-08 cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4 LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins) with differing domain architecture appear to function as RNA-binding proteins in eukaryotic cellular processes.
rpsblast_cdd gnl|CDD|153401 21 90 + 70 none 85.37 82 34.29 9e-08 cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7 which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 323 411 89 PTHR22792:SF52 none none none
PANTHER 21 163 143 PTHR22792:SF52 none none none
SUPERFAMILY 16 91 76 SSF46785 none none none
PRINTS 20 37 18 PR00302 none Lupus La protein signature IPR002344
PRINTS 99 115 17 PR00302 none Lupus La protein signature IPR002344
PRINTS 46 61 16 PR00302 none Lupus La protein signature IPR002344
PRINTS 77 90 14 PR00302 none Lupus La protein signature IPR002344
PANTHER 323 411 89 PTHR22792 none none none
SMART 11 91 81 SM00715 none Domain in the RNA-binding Lupus La protein IPR006630
PANTHER 236 304 69 PTHR22792:SF52 none none none
Gene3D 103 142 40 G3DSA:3.30.70.330 none none IPR012677
Gene3D 236 279 44 G3DSA:3.30.70.330 none none IPR012677
Pfam 21 76 56 PF05383 none La domain IPR006630
ProSiteProfiles 7 98 92 PS50961 none La-type HTH domain profile. IPR006630
PANTHER 236 304 69 PTHR22792 none none none
PANTHER 21 163 143 PTHR22792 none none none
Gene3D 20 92 73 G3DSA:1.10.10.10 none none IPR011991
SUPERFAMILY 99 144 46 SSF54928 none none none
SUPERFAMILY 233 271 39 SSF54928 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 23   Secretory pathway 4 0.683 0.056 NON-PLANT 23