Protein : Qrob_P0031830.2 Q. robur
Protein Identifier  ? Qrob_P0031830.2 Organism . Name  Quercus robur
Score  17.3 Score Type  egn
Protein Description  (M=16) KOG1812 - Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 281  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1399270 13 255 + 243 Gaps:6 41.51 571 58.23 2e-85 zinc finger protein putative
blastp_kegg lcl|sot:102603567 7 255 + 249 Gaps:13 42.68 553 52.54 9e-71 uncharacterized LOC102603567
blastp_kegg lcl|pper:PRUPE_ppa002629mg 11 255 + 245 Gaps:14 35.54 650 54.98 1e-69 hypothetical protein
blastp_kegg lcl|pmum:103324409 11 255 + 245 Gaps:15 31.68 726 55.65 2e-65 uncharacterized LOC103324409
blastp_kegg lcl|pxb:103934299 10 255 + 246 Gaps:18 32.87 718 55.08 7e-65 uncharacterized LOC103934299
blastp_kegg lcl|mtr:MTR_4g060940 5 253 + 249 Gaps:14 43.44 541 51.91 2e-64 IBR domain containing protein
blastp_kegg lcl|tcc:TCM_041093 5 255 + 251 Gaps:24 42.37 583 52.23 5e-64 Zinc finger protein putative isoform 1
blastp_kegg lcl|gmx:100790037 12 255 + 244 Gaps:15 41.83 557 55.36 9e-64 uncharacterized LOC100790037
blastp_kegg lcl|cit:102623002 11 255 + 245 Gaps:14 40.88 565 51.08 1e-61 uncharacterized LOC102623002
blastp_kegg lcl|cic:CICLE_v10028109mg 11 255 + 245 Gaps:14 40.96 564 50.65 1e-60 hypothetical protein
rpsblast_kog gnl|CDD|37023 171 255 + 85 Gaps:4 22.14 384 38.82 2e-08 KOG1812 KOG1812 KOG1812 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 188 250 63 G3DSA:3.30.420.10 none none IPR012337
Phobius 1 250 250 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 251 279 29 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 280 280 1 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none

1 Localization

Analysis Start End Length
TMHMM 254 276 22

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting