Protein : Qrob_P0031550.2 Q. robur
Protein Identifier  ? Qrob_P0031550.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) KOG0108//KOG0111//KOG0113//KOG0116//KOG0124//KOG0127//KOG0144//KOG0148//KOG0149//KOG0921 - mRNA cleavage and polyadenylation factor I complex subunit RNA15 [RNA processing and modification]. // Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification protein turnover chaperones]. // U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]. // RasGAP SH3 binding protein rasputin contains NTF2 and RRM domains [Signal transduction mechanisms]. // Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]. // Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]. // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]. // Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification Translation ribosomal structure and biogenesis]. // Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]. // Dosage compensation complex subunit MLE [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 174  
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0006950 response to stress Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335744 1 87 + 87 none 65.41 133 90.80 5e-53 glycine-rich RNA-binding protein GRP1A
blastp_kegg lcl|gmx:100796543 1 86 + 86 none 50.29 171 88.37 2e-49 glycine-rich RNA-binding protein 7-like
blastp_kegg lcl|eus:EUTSA_v10000386mg 1 87 + 87 none 84.47 103 87.36 3e-49 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0530530 1 86 + 86 none 51.81 166 88.37 3e-49 glycine-rich RNA-binding protein putative
blastp_kegg lcl|vvi:100853676 1 85 + 85 none 52.47 162 89.41 3e-49 glycine-rich RNA-binding protein GRP1A-like
blastp_kegg lcl|fve:101299909 1 85 + 85 none 48.02 177 88.24 5e-49 uncharacterized protein LOC101299909 isoform 1
blastp_kegg lcl|mus:103979811 1 86 + 86 none 50.59 170 87.21 1e-48 glycine-rich RNA-binding protein-like
blastp_kegg lcl|tcc:TCM_006886 1 85 + 85 none 50.60 168 89.41 2e-48 Glycine-rich RNA-binding protein 7
blastp_kegg lcl|mus:103981442 1 87 + 87 none 55.06 158 86.21 1e-47 glycine-rich RNA-binding protein 7-like
blastp_kegg lcl|mtr:MTR_4g070190 1 86 + 86 none 52.44 164 86.05 1e-47 Glycine-rich RNA binding protein
blastp_pdb 1x5s_A 9 96 + 88 Gaps:1 87.25 102 50.56 2e-23 mol:protein length:102 Cold-inducible RNA-binding protein
blastp_pdb 2cqb_A 10 97 + 88 none 86.27 102 42.05 1e-14 mol:protein length:102 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 2fy1_A 1 85 + 85 Gaps:1 72.41 116 40.48 5e-14 mol:protein length:116 RNA-binding motif protein Y chromosome fami
blastp_pdb 2dh7_A 7 97 + 91 none 86.67 105 36.26 5e-14 mol:protein length:105 Nucleolysin TIAR
blastp_pdb 2kyx_A 10 85 + 76 none 91.57 83 46.05 6e-14 mol:protein length:83 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3mdf_B 10 85 + 76 none 89.41 85 46.05 6e-14 mol:protein length:85 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3mdf_A 10 85 + 76 none 89.41 85 46.05 6e-14 mol:protein length:85 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3lpy_B 10 84 + 75 none 94.94 79 46.67 1e-13 mol:protein length:79 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 3lpy_A 10 84 + 75 none 94.94 79 46.67 1e-13 mol:protein length:79 Peptidyl-prolyl cis-trans isomerase E
blastp_pdb 2dh8_A 9 97 + 89 Gaps:1 83.81 105 37.50 2e-13 mol:protein length:105 DAZ-associated protein 1
blastp_uniprot_sprot sp|P49310|GRP1_SINAL 1 97 + 97 none 58.43 166 84.54 5e-46 Glycine-rich RNA-binding protein GRP1A OS Sinapis alba PE 2 SV 1
blastp_uniprot_sprot sp|Q03250|RBG7_ARATH 1 85 + 85 none 48.30 176 82.35 1e-45 Glycine-rich RNA-binding protein 7 OS Arabidopsis thaliana GN RBG7 PE 1 SV 1
blastp_uniprot_sprot sp|Q03878|GRP1_DAUCA 4 86 + 83 none 52.87 157 84.34 4e-45 Glycine-rich RNA-binding protein OS Daucus carota PE 2 SV 1
blastp_uniprot_sprot sp|P49311|GRP2_SINAL 1 85 + 85 none 50.30 169 80.00 2e-44 Glycine-rich RNA-binding protein GRP2A OS Sinapis alba PE 2 SV 1
blastp_uniprot_sprot sp|Q43472|GRP_HORVU 4 87 + 84 none 52.17 161 78.57 3e-43 Glycine-rich RNA-binding protein blt801 OS Hordeum vulgare GN blt801 PE 1 SV 1
blastp_uniprot_sprot sp|Q99070|GRP2_SORBI 1 86 + 86 none 51.19 168 73.26 1e-41 Glycine-rich RNA-binding protein 2 OS Sorghum bicolor GN GRP2 PE 2 SV 1
blastp_uniprot_sprot sp|Q03251|RBG8_ARATH 4 85 + 82 none 48.52 169 74.39 2e-39 Glycine-rich RNA-binding protein 8 OS Arabidopsis thaliana GN RBG8 PE 1 SV 1
blastp_uniprot_sprot sp|Q05966|GRP10_BRANA 4 86 + 83 none 49.11 169 74.70 4e-39 Glycine-rich RNA-binding protein 10 OS Brassica napus GN GRP10 PE 1 SV 1
blastp_uniprot_sprot sp|P10979|GRPA_MAIZE 1 127 + 127 Gaps:6 77.07 157 75.21 2e-36 Glycine-rich RNA-binding abscisic acid-inducible protein OS Zea mays GN RAB15 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SIX3|RBG1_ARATH 1 90 + 90 Gaps:3 58.39 149 70.11 9e-36 Probable glycine-rich RNA-binding protein 1 OS Arabidopsis thaliana GN RBG1 PE 2 SV 2

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 9 82 74 SM00360 none RNA recognition motif IPR000504
Pfam 11 80 70 PF00076 none RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IPR000504
PANTHER 1 173 173 PTHR24012:SF238 none none IPR031051
ProSiteProfiles 8 86 79 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
PANTHER 1 173 173 PTHR24012 none none none
Gene3D 7 100 94 G3DSA:3.30.70.330 none none IPR012677
SUPERFAMILY 8 118 111 SSF54928 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting