Protein : Qrob_P0027720.2 Q. robur
Protein Identifier  ? Qrob_P0027720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=10) PTHR12565//PTHR12565:SF70 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED (PTHR12565:SF70) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 562  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_020177 9 561 + 553 Gaps:23 96.89 578 71.07 0.0 Basic helix-loop-helix DNA-binding superfamily protein isoform 1
blastp_kegg lcl|pper:PRUPE_ppa003543mg 1 561 + 561 Gaps:24 100.00 567 70.19 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0002s23650g 2 561 + 560 Gaps:28 98.41 567 69.71 0.0 POPTRDRAFT_710327 hypothetical protein
blastp_kegg lcl|pmum:103322636 1 547 + 547 Gaps:24 99.82 554 70.16 0.0 transcription factor bHLH62
blastp_kegg lcl|vvi:100259005 1 561 + 561 Gaps:44 100.00 569 70.47 0.0 transcription factor bHLH62-like
blastp_kegg lcl|pop:POPTR_0014s14650g 11 561 + 551 Gaps:33 96.83 568 69.82 0.0 POPTRDRAFT_572918 hypothetical protein
blastp_kegg lcl|fve:101303990 1 560 + 560 Gaps:41 99.82 550 68.31 0.0 transcription factor bHLH78-like
blastp_kegg lcl|mdm:103400618 1 561 + 561 Gaps:45 100.00 530 68.30 0.0 transcription factor bHLH77
blastp_kegg lcl|pxb:103962600 1 561 + 561 Gaps:45 100.00 530 67.74 0.0 transcription factor bHLH62-like
blastp_kegg lcl|pxb:103960363 1 561 + 561 Gaps:45 100.00 530 67.74 0.0 transcription factor bHLH62
blastp_uniprot_sprot sp|Q9SRT2|BH062_ARATH 6 561 + 556 Gaps:138 96.49 456 50.68 6e-92 Transcription factor bHLH62 OS Arabidopsis thaliana GN BHLH62 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJL4|BH078_ARATH 41 561 + 521 Gaps:112 90.16 498 49.89 1e-88 Transcription factor bHLH78 OS Arabidopsis thaliana GN BHLH78 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK48|BH077_ARATH 268 560 + 293 Gaps:41 72.24 371 55.97 3e-73 Transcription factor bHLH77 OS Arabidopsis thaliana GN BHLH77 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAA9|BH049_ARATH 150 541 + 392 Gaps:73 70.16 486 46.92 5e-62 Transcription factor bHLH49 OS Arabidopsis thaliana GN BHLH49 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NKN9|BH074_ARATH 315 504 + 190 Gaps:25 52.73 366 52.33 7e-49 Transcription factor bHLH74 OS Arabidopsis thaliana GN BHLH74 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C670|BH076_ARATH 312 462 + 151 Gaps:8 39.23 390 61.44 5e-48 Transcription factor bHLH76 OS Arabidopsis thaliana GN BHLH76 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY61|BH063_ARATH 359 535 + 177 Gaps:23 48.36 335 58.64 7e-48 Transcription factor bHLH63 OS Arabidopsis thaliana GN BHLH63 PE 2 SV 1
blastp_uniprot_sprot sp|Q0JXE7|BPE_ARATH 311 449 + 139 Gaps:11 37.32 343 65.62 2e-43 Transcription factor BPE OS Arabidopsis thaliana GN BPE PE 2 SV 1
blastp_uniprot_sprot sp|Q93W88|BH137_ARATH 316 486 + 171 Gaps:18 56.99 286 57.06 1e-42 Transcription factor bHLH137 OS Arabidopsis thaliana GN BHLH137 PE 2 SV 1
blastp_uniprot_sprot sp|Q93VJ4|BEE2_ARATH 321 452 + 132 Gaps:3 42.43 304 62.79 4e-42 Transcription factor BEE 2 OS Arabidopsis thaliana GN BEE2 PE 2 SV 1
rpsblast_cdd gnl|CDD|197674 375 424 + 50 Gaps:2 98.11 53 36.54 2e-08 smart00353 HLH helix loop helix domain.
rpsblast_cdd gnl|CDD|28964 367 424 + 58 Gaps:2 100.00 60 31.67 7e-07 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 26 220 195 PTHR12565 none none none
PANTHER 275 542 268 PTHR12565 none none none
SUPERFAMILY 367 438 72 SSF47459 none none IPR011598
SMART 375 425 51 SM00353 none helix loop helix domain IPR011598
Pfam 373 420 48 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
Gene3D 369 437 69 G3DSA:4.10.280.10 none none IPR011598
PANTHER 26 220 195 PTHR12565:SF70 none none IPR031064
PANTHER 275 542 268 PTHR12565:SF70 none none IPR031064
ProSiteProfiles 369 419 51 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting