Protein : Qrob_P0026500.2 Q. robur
Protein Identifier  ? Qrob_P0026500.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K14554 - U3 small nucleolar RNA-associated protein 21 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 792  
Kegg Orthology  K14554
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0032040 small-subunit processome A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266615 1 791 + 791 Gaps:57 94.70 905 76.31 0.0 uncharacterized LOC100266615
blastp_kegg lcl|tcc:TCM_038748 1 791 + 791 Gaps:34 84.33 906 83.12 0.0 Transducin family protein / WD-40 repeat family protein
blastp_kegg lcl|rcu:RCOM_0399490 1 791 + 791 Gaps:54 94.70 906 74.13 0.0 WD-repeat protein putative
blastp_kegg lcl|pmum:103323711 1 791 + 791 Gaps:35 84.31 905 83.62 0.0 U3 small nucleolar RNA-associated protein 21 homolog
blastp_kegg lcl|pop:POPTR_0006s07850g 1 791 + 791 Gaps:34 84.40 910 80.60 0.0 POPTRDRAFT_819132 transducin family protein
blastp_kegg lcl|pper:PRUPE_ppa001118mg 1 791 + 791 Gaps:35 84.31 905 83.49 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10007395mg 1 791 + 791 Gaps:37 84.34 907 82.48 0.0 hypothetical protein
blastp_kegg lcl|cit:102623825 1 791 + 791 Gaps:37 84.34 907 82.48 0.0 uncharacterized LOC102623825
blastp_kegg lcl|pxb:103959407 1 791 + 791 Gaps:36 84.29 904 82.02 0.0 U3 small nucleolar RNA-associated protein 21 homolog
blastp_kegg lcl|gmx:100795420 1 790 + 790 Gaps:34 84.22 906 80.47 0.0 WD repeat-containing protein 36-like
blastp_pdb 2zkq_a 290 472 + 183 Gaps:18 56.47 317 27.93 4e-11 mol:protein length:317 40S Ribosomal protein RACK1
blastp_pdb 3dm0_A 290 501 + 212 Gaps:20 29.97 694 28.37 5e-11 mol:protein length:694 Maltose-binding periplasmic protein fused wit
blastp_pdb 2gnq_A 287 491 + 205 Gaps:28 90.77 336 30.49 4e-09 mol:protein length:336 WD-repeat protein 5
blastp_pdb 2xl3_B 287 489 + 203 Gaps:13 64.07 334 25.70 5e-09 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 287 489 + 203 Gaps:13 64.07 334 25.70 5e-09 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 287 489 + 203 Gaps:13 64.07 334 25.70 5e-09 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 287 489 + 203 Gaps:13 64.07 334 25.70 5e-09 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 3emh_A 287 489 + 203 Gaps:13 67.30 318 25.70 7e-09 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 2h9p_A 287 489 + 203 Gaps:13 65.05 329 25.70 9e-09 mol:protein length:329 WD-repeat protein 5
blastp_pdb 2h9l_A 287 489 + 203 Gaps:13 65.05 329 25.70 9e-09 mol:protein length:329 WD-repeat protein 5
blastp_uniprot_sprot sp|O14053|YC47_SCHPO 3 774 + 772 Gaps:87 82.04 902 35.41 8e-81 Uncharacterized WD repeat-containing protein C1672.07 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPCC1672.07 PE 4 SV 1
blastp_uniprot_sprot sp|Q8NI36|WDR36_HUMAN 2 789 + 788 Gaps:72 77.29 951 34.97 6e-71 WD repeat-containing protein 36 OS Homo sapiens GN WDR36 PE 1 SV 1
blastp_uniprot_sprot sp|Q06078|UTP21_YEAST 3 774 + 772 Gaps:116 78.81 939 32.43 2e-68 U3 small nucleolar RNA-associated protein 21 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UTP21 PE 1 SV 1
blastp_uniprot_sprot sp|Q8NBT0|POC1A_HUMAN 163 447 + 285 Gaps:35 65.36 407 24.44 1e-13 POC1 centriolar protein homolog A OS Homo sapiens GN POC1A PE 1 SV 2
blastp_uniprot_sprot sp|Q2TBP4|POC1A_BOVIN 163 447 + 285 Gaps:41 65.36 407 25.56 1e-13 POC1 centriolar protein homolog A OS Bos taurus GN POC1A PE 2 SV 1
blastp_uniprot_sprot sp|Q8JZX3|POC1A_MOUSE 167 447 + 281 Gaps:37 64.69 405 24.43 1e-13 POC1 centriolar protein homolog A OS Mus musculus GN Poc1a PE 2 SV 2
blastp_uniprot_sprot sp|Q28I85|POC1A_XENTR 163 447 + 285 Gaps:29 60.32 441 26.69 2e-13 POC1 centriolar protein homolog A OS Xenopus tropicalis GN poc1a PE 2 SV 1
blastp_uniprot_sprot sp|P69104|GBLP_TRYBR 290 472 + 183 Gaps:18 56.29 318 28.49 2e-13 Guanine nucleotide-binding protein subunit beta-like protein OS Trypanosoma brucei rhodesiense PE 2 SV 1
blastp_uniprot_sprot sp|P69103|GBLP_TRYBB 290 472 + 183 Gaps:18 56.29 318 28.49 2e-13 Guanine nucleotide-binding protein subunit beta-like protein OS Trypanosoma brucei brucei PE 2 SV 1
blastp_uniprot_sprot sp|Q7T0P4|POC1A_XENLA 163 447 + 285 Gaps:29 60.32 441 27.07 2e-13 POC1 centriolar protein homolog A OS Xenopus laevis GN poc1a PE 1 SV 2

24 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 163 489 327 SSF50998 none none IPR011047
SMART 368 406 39 SM00320 none WD40 repeats IPR001680
SMART 451 490 40 SM00320 none WD40 repeats IPR001680
SMART 180 219 40 SM00320 none WD40 repeats IPR001680
SMART 409 448 40 SM00320 none WD40 repeats IPR001680
SMART 82 119 38 SM00320 none WD40 repeats IPR001680
SMART 327 365 39 SM00320 none WD40 repeats IPR001680
Pfam 334 365 32 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 182 217 36 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 413 448 36 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 333 457 125 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PANTHER 3 521 519 PTHR13889 none none none
PANTHER 539 791 253 PTHR13889 none none none
ProSitePatterns 435 449 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
ProSiteProfiles 333 374 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 416 449 34 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
ProSiteProfiles 164 228 65 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PANTHER 3 521 519 PTHR13889:SF2 none none none
PANTHER 539 791 253 PTHR13889:SF2 none none none
Coils 629 650 22 Coil none none none
Pfam 552 788 237 PF04192 none Utp21 specific WD40 associated putative domain IPR007319
Gene3D 88 325 238 G3DSA:2.130.10.10 none none IPR015943
Gene3D 335 489 155 G3DSA:2.130.10.10 none none IPR015943
Gene3D 28 55 28 G3DSA:2.130.10.10 none none IPR015943

0 Localization

0 Qtllist

0 Targeting