Protein : Qrob_P0025260.2 Q. robur
Protein Identifier  ? Qrob_P0025260.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K13422 - transcription factor MYC2 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 697  
Kegg Orthology  K13422
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100250607 1 696 + 696 Gaps:69 100.00 663 77.83 0.0 transcription factor MYC2-like
blastp_kegg lcl|tcc:TCM_015714 1 696 + 696 Gaps:55 100.00 669 75.93 0.0 Basic helix-loop-helix DNA-binding family protein
blastp_kegg lcl|rcu:RCOM_0864470 1 694 + 694 Gaps:80 99.85 663 76.74 0.0 Transcription factor AtMYC2 putative (EC:1.3.1.74)
blastp_kegg lcl|pmum:103336894 1 696 + 696 Gaps:61 100.00 685 73.14 0.0 transcription factor MYC2
blastp_kegg lcl|mdm:103404780 1 696 + 696 Gaps:64 99.71 688 72.16 0.0 transcription factor MYC2-like
blastp_kegg lcl|mdm:103436897 1 696 + 696 Gaps:59 99.71 689 71.76 0.0 transcription factor MYC2
blastp_kegg lcl|pper:PRUPE_ppa002404mg 1 696 + 696 Gaps:70 100.00 676 73.37 0.0 hypothetical protein
blastp_kegg lcl|pxb:103939054 1 696 + 696 Gaps:65 99.71 687 72.26 0.0 transcription factor MYC2
blastp_kegg lcl|cic:CICLE_v10011214mg 1 696 + 696 Gaps:75 100.00 685 71.82 0.0 hypothetical protein
blastp_kegg lcl|cit:102626457 1 696 + 696 Gaps:75 100.00 685 71.82 0.0 transcription factor MYC2-like
blastp_uniprot_sprot sp|Q39204|MYC2_ARATH 1 693 + 693 Gaps:100 100.00 623 61.96 0.0 Transcription factor MYC2 OS Arabidopsis thaliana GN MYC2 PE 1 SV 2
blastp_uniprot_sprot sp|O49687|MYC4_ARATH 1 695 + 695 Gaps:148 98.64 589 62.48 0.0 Transcription factor MYC4 OS Arabidopsis thaliana GN MYC4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FIP9|MYC3_ARATH 11 694 + 684 Gaps:65 88.18 592 62.64 4e-102 Transcription factor MYC3 OS Arabidopsis thaliana GN MYC3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LUK7|BH028_ARATH 17 692 + 676 Gaps:50 78.67 511 52.74 6e-54 Transcription factor bHLH28 OS Arabidopsis thaliana GN BHLH28 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LNJ5|BH013_ARATH 68 689 + 622 Gaps:38 61.69 590 45.88 4e-41 Transcription factor bHLH13 OS Arabidopsis thaliana GN BHLH13 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPY8|AIB_ARATH 81 688 + 608 Gaps:38 64.66 566 42.35 2e-39 Transcription factor ABA-INDUCIBLE bHLH-TYPE OS Arabidopsis thaliana GN AIB PE 2 SV 2
blastp_uniprot_sprot sp|O23487|BH003_ARATH 17 673 + 657 Gaps:84 80.73 467 38.73 6e-36 Transcription factor bHLH3 OS Arabidopsis thaliana GN BHLH3 PE 2 SV 1
blastp_uniprot_sprot sp|O23090|BH014_ARATH 63 688 + 626 Gaps:57 85.82 423 39.67 1e-29 Transcription factor bHLH14 OS Arabidopsis thaliana GN BHLH14 PE 2 SV 1
blastp_uniprot_sprot sp|E3SXU5|BHLHM_PEA 83 267 + 185 Gaps:12 51.12 358 37.16 9e-28 Truncated basic helix-loop-helix protein A OS Pisum sativum GN BHLH PE 4 SV 1
blastp_uniprot_sprot sp|E3SXU4|BHLHW_PEA 83 674 + 592 Gaps:35 55.06 652 36.21 6e-27 Basic helix-loop-helix protein A OS Pisum sativum GN BHLH PE 4 SV 1
rpsblast_cdd gnl|CDD|206383 83 267 + 185 Gaps:14 100.00 171 57.89 2e-64 pfam14215 bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal. This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y).
rpsblast_cdd gnl|CDD|197674 520 568 + 49 Gaps:3 98.11 53 40.38 1e-10 smart00353 HLH helix loop helix domain.
rpsblast_cdd gnl|CDD|28964 512 567 + 56 Gaps:3 98.33 60 35.59 4e-10 cd00083 HLH Helix-loop-helix domain found in specific DNA- binding proteins that act as transcription factors 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region HLH forms homo- and heterodimers dimerization creates a parallel left-handed four helix bundle the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3) those lacking the basic domain (Emc Id) function as negative regulators since they fail to bind DNA those (hairy E(spl) deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3) those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins the binding of small molecules (e.g. dioxin) and interactions with non-PAS proteins..
rpsblast_cdd gnl|CDD|200925 517 563 + 47 Gaps:2 94.23 52 40.82 1e-08 pfam00010 HLH Helix-loop-helix DNA-binding domain.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 513 562 50 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
Gene3D 517 583 67 G3DSA:4.10.280.10 none none IPR011598
SMART 519 568 50 SM00353 none helix loop helix domain IPR011598
PANTHER 475 692 218 PTHR11514:SF28 none none none
PANTHER 15 425 411 PTHR11514:SF28 none none none
Coils 559 594 36 Coil none none none
Pfam 517 562 46 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
SUPERFAMILY 516 584 69 SSF47459 none none IPR011598
PANTHER 475 692 218 PTHR11514 none none none
PANTHER 15 425 411 PTHR11514 none none none
Pfam 83 267 185 PF14215 none bHLH-MYC and R2R3-MYB transcription factors N-terminal IPR025610

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting