Protein : Qrob_P0025100.2 Q. robur
Protein Identifier  ? Qrob_P0025100.2 Organism . Name  Quercus robur
Score  97.0 Score Type  egn
Protein Description  (M=1) KOG1892 - Actin filament-binding protein Afadin [Cytoskeleton]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 425  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103939057 1 424 + 424 Gaps:53 100.00 377 71.09 4e-138 putative DNA-binding protein ESCAROLA
blastp_kegg lcl|pxb:103965732 1 424 + 424 Gaps:58 100.00 374 71.93 5e-138 putative DNA-binding protein ESCAROLA
blastp_kegg lcl|mdm:103436890 47 424 + 378 Gaps:45 90.16 376 74.04 3e-136 putative DNA-binding protein ESCAROLA
blastp_kegg lcl|pop:POPTR_0001s02600g 133 421 + 289 Gaps:20 72.94 377 81.45 3e-136 hypothetical protein
blastp_kegg lcl|fve:101304880 101 424 + 324 Gaps:25 79.11 383 75.58 9e-136 uncharacterized protein LOC101304880
blastp_kegg lcl|pper:PRUPE_ppa007231mg 42 424 + 383 Gaps:41 91.25 377 74.71 4e-135 hypothetical protein
blastp_kegg lcl|pmum:103336903 42 424 + 383 Gaps:42 90.98 377 75.80 4e-135 histone acetyltransferase KAT6A-like
blastp_kegg lcl|rcu:RCOM_0864940 43 421 + 379 Gaps:61 90.43 376 71.18 8e-133 DNA binding protein putative
blastp_kegg lcl|vvi:100245362 91 424 + 334 Gaps:41 85.84 353 75.58 1e-132 uncharacterized LOC100245362
blastp_kegg lcl|cic:CICLE_v10031852mg 118 424 + 307 Gaps:27 75.53 376 75.70 6e-130 hypothetical protein
blastp_uniprot_sprot sp|Q9S7C9|ESCA_ARATH 173 340 + 168 Gaps:25 51.77 311 39.75 3e-11 Putative DNA-binding protein ESCAROLA OS Arabidopsis thaliana GN ESC PE 2 SV 1
rpsblast_cdd gnl|CDD|202659 225 343 + 119 Gaps:9 98.33 120 42.37 9e-31 pfam03479 DUF296 Domain of unknown function (DUF296). This putative domain is found in proteins that contain AT-hook motifs pfam02178 which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues eg at 117 119 and 133 in Reut_B5223 which should be a structurally conserved metal-binding unit based on structural comparison with known metal-binding structures. The proteins should work as trimers.
rpsblast_cdd gnl|CDD|211390 228 340 + 113 Gaps:8 98.23 113 39.64 4e-27 cd11378 DUF296 Domain of unknown function found in archaea bacteria and plants. This domain is found in proteins that contain AT-hook motifs which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins.
rpsblast_kog gnl|CDD|37103 1 193 + 193 Gaps:22 11.36 1629 20.00 4e-07 KOG1892 KOG1892 KOG1892 Actin filament-binding protein Afadin [Cytoskeleton].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 133 145 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 186 198 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
PANTHER 133 221 89 PTHR31500:SF0 none none none
PANTHER 133 221 89 PTHR31500 none none none
PANTHER 237 389 153 PTHR31500 none none none
PANTHER 237 389 153 PTHR31500:SF0 none none none
ProSiteProfiles 221 362 142 PS51742 none PPC domain profile profile. IPR005175
SUPERFAMILY 223 342 120 SSF117856 none none none
Gene3D 225 342 118 G3DSA:3.30.1330.80 none none none
Pfam 225 342 118 PF03479 none Domain of unknown function (DUF296) IPR005175

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting