Protein : Qrob_P0020930.2 Q. robur
Protein Identifier  ? Qrob_P0020930.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02977 - small subunit ribosomal protein S27Ae Gene Prediction Quality  validated
Protein length 

Sequence

Length: 183  
Kegg Orthology  K02977
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

48 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103964910 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|pxb:103956847 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|pxb:103953084 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|mdm:103424406 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|mdm:103417465 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|mdm:103414341 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|mdm:103405947 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|mdm:103452148 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|mdm:103451992 27 182 + 156 none 100.00 156 99.36 1e-109 ubiquitin-40S ribosomal protein S27a
blastp_kegg lcl|mdm:103421932 27 182 + 156 none 100.00 156 98.72 2e-109 ubiquitin-40S ribosomal protein S27a-like
blastp_pdb 3u5g_f 27 174 + 148 none 97.37 152 69.59 2e-68 mol:protein length:152 40S ribosomal protein S31
blastp_pdb 3u5c_f 27 174 + 148 none 97.37 152 72.30 1e-62 mol:protein length:152 40S ribosomal protein S31
blastp_pdb 3olm_D 27 102 + 76 none 96.20 79 97.37 4e-47 mol:protein length:79 Ubiquitin
blastp_pdb 3cmm_D 27 102 + 76 none 100.00 76 97.37 6e-47 mol:protein length:76 Ubiquitin
blastp_pdb 3cmm_B 27 102 + 76 none 100.00 76 97.37 6e-47 mol:protein length:76 Ubiquitin
blastp_pdb 2l00_B 27 102 + 76 none 100.00 76 97.37 6e-47 mol:protein length:76 Ubiquitin
blastp_pdb 2jt4_B 27 102 + 76 none 100.00 76 97.37 6e-47 mol:protein length:76 Ubiquitin
blastp_pdb 2g3q_B 27 102 + 76 none 100.00 76 97.37 6e-47 mol:protein length:76 Ubiquitin
blastp_pdb 1wr1_A 27 102 + 76 none 100.00 76 97.37 6e-47 mol:protein length:76 Ubiquitin
blastp_pdb 1q0w_B 27 102 + 76 none 100.00 76 97.37 6e-47 mol:protein length:76 Ubiquitin
blastp_uniprot_sprot sp|P62981|RS27A_SOLTU 27 182 + 156 none 100.00 156 97.44 7e-109 Ubiquitin-40S ribosomal protein S27a OS Solanum tuberosum GN UBI3 PE 2 SV 2
blastp_uniprot_sprot sp|P62980|RS27A_SOLLC 27 182 + 156 none 100.00 156 97.44 7e-109 Ubiquitin-40S ribosomal protein S27a OS Solanum lycopersicum GN UBI3 PE 3 SV 2
blastp_uniprot_sprot sp|P47905|RS27A_LUPAL 27 179 + 153 none 98.71 155 98.04 7e-107 Ubiquitin-40S ribosomal protein S27a OS Lupinus albus PE 3 SV 2
blastp_uniprot_sprot sp|P59232|R27AB_ARATH 27 181 + 155 none 98.73 157 96.13 6e-106 Ubiquitin-40S ribosomal protein S27a-2 OS Arabidopsis thaliana GN RPS27AB PE 1 SV 2
blastp_uniprot_sprot sp|Q9ARZ9|R27AA_ORYSJ 27 178 + 152 Gaps:1 98.71 155 95.42 2e-102 Ubiquitin-40S ribosomal protein S27a-1 OS Oryza sativa subsp. japonica GN RPS27AA PE 2 SV 1
blastp_uniprot_sprot sp|P0CG87|RS272_HORVU 27 179 + 153 Gaps:2 100.00 155 96.13 3e-102 Ubiquitin-40S ribosomal protein S27a OS Hordeum vulgare GN MUB2 PE 3 SV 1
blastp_uniprot_sprot sp|P27923|RS27A_MAIZE 27 179 + 153 Gaps:2 100.00 155 95.48 3e-102 Ubiquitin-40S ribosomal protein S27a OS Zea mays GN UBF9 PE 2 SV 2
blastp_uniprot_sprot sp|P51431|R27AB_ORYSJ 27 179 + 153 Gaps:2 100.00 155 95.48 4e-102 Ubiquitin-40S ribosomal protein S27a-2 OS Oryza sativa subsp. japonica GN RPS27AB PE 2 SV 3
blastp_uniprot_sprot sp|P0CG86|RS271_HORVU 27 179 + 153 Gaps:2 100.00 155 95.48 7e-102 Ubiquitin-40S ribosomal protein S27a OS Hordeum vulgare GN MUB1 PE 3 SV 1
blastp_uniprot_sprot sp|P59271|R27AA_ARATH 27 179 + 153 none 98.08 156 92.16 1e-87 Ubiquitin-40S ribosomal protein S27a-1 OS Arabidopsis thaliana GN RPS27AA PE 1 SV 2

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 27 179 153 PTHR10666:SF87 none none none
SMART 27 98 72 SM00213 none Ubiquitin homologues IPR000626
Pfam 127 173 47 PF01599 none Ribosomal protein S27a IPR002906
PANTHER 27 179 153 PTHR10666 none none none
Pfam 32 100 69 PF00240 none Ubiquitin family IPR000626
Gene3D 27 114 88 G3DSA:3.10.20.90 none none none
SUPERFAMILY 126 179 54 SSF57829 none none IPR011332
ProSiteProfiles 27 102 76 PS50053 none Ubiquitin domain profile. IPR000626
SUPERFAMILY 19 103 85 SSF54236 none none IPR029071
PRINTS 79 100 22 PR00348 none Ubiquitin signature IPR019956
PRINTS 58 78 21 PR00348 none Ubiquitin signature IPR019956
PRINTS 37 57 21 PR00348 none Ubiquitin signature IPR019956
ProSitePatterns 53 78 26 PS00299 none Ubiquitin domain signature. IPR019954

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting