Protein : Qrob_P0020660.2 Q. robur
Protein Identifier  ? Qrob_P0020660.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR13068:SF9 - MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN (PTHR13068:SF9) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 379  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa026773mg 10 368 + 359 Gaps:14 97.90 381 63.00 1e-163 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1034690 7 377 + 371 Gaps:2 98.16 380 62.20 4e-163 hypothetical protein
blastp_kegg lcl|pmum:103319853 10 368 + 359 Gaps:14 97.64 382 62.20 7e-163 uncharacterized LOC103319853
blastp_kegg lcl|tcc:TCM_034932 7 374 + 368 Gaps:2 97.37 380 63.24 8e-158 Mitochondrial transcription termination factor family protein putative
blastp_kegg lcl|pper:PRUPE_ppa019287mg 12 368 + 357 Gaps:9 97.55 367 64.53 5e-157 hypothetical protein
blastp_kegg lcl|mdm:103446494 7 368 + 362 Gaps:6 92.86 392 62.64 1e-152 uncharacterized LOC103446494
blastp_kegg lcl|mdm:103453313 7 374 + 368 Gaps:10 98.43 382 59.84 2e-151 uncharacterized LOC103453313
blastp_kegg lcl|pxb:103959053 7 368 + 362 Gaps:6 93.57 389 62.36 8e-147 uncharacterized LOC103959053
blastp_kegg lcl|pxb:103962208 7 368 + 362 Gaps:4 95.29 382 60.99 1e-144 uncharacterized LOC103962208
blastp_kegg lcl|fve:101291731 28 368 + 341 Gaps:3 93.11 363 60.36 1e-142 uncharacterized protein LOC101291731
rpsblast_cdd gnl|CDD|202273 81 358 + 278 Gaps:39 100.00 345 32.75 2e-20 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_cdd gnl|CDD|178738 82 320 + 239 Gaps:19 50.51 487 21.14 2e-08 PLN03196 PLN03196 MOC1-like protein Provisional.
rpsblast_kog gnl|CDD|36481 79 336 + 258 Gaps:13 62.71 413 25.48 1e-21 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 260 358 99 PF02536 none mTERF IPR003690
Pfam 83 297 215 PF02536 none mTERF IPR003690
PANTHER 14 371 358 PTHR13068 none none none
PANTHER 14 371 358 PTHR13068:SF9 none none none
SMART 168 199 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 132 163 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 204 234 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 96 127 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 273 304 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 238 268 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 305 336 32 SM00733 none Mitochondrial termination factor repeats IPR003690

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 65   Mitochondrion 5 0.192 0.418 NON-PLANT 65