Protein : Qrob_P0020370.2 Q. robur
Protein Identifier  ? Qrob_P0020370.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=10) PF02178 - AT hook motif Gene Prediction Quality  validated
Protein length 

Sequence

Length: 348  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100248904 11 341 + 331 Gaps:81 28.09 947 58.65 1e-76 uncharacterized LOC100248904
blastp_kegg lcl|pper:PRUPE_ppa016410mg 1 342 + 342 Gaps:77 33.24 1056 51.00 2e-67 hypothetical protein
blastp_kegg lcl|pmum:103319657 1 341 + 341 Gaps:77 31.45 1113 50.86 3e-67 uncharacterized LOC103319657
blastp_kegg lcl|fve:101301307 4 341 + 338 Gaps:90 32.38 1149 47.04 1e-65 uncharacterized protein LOC101301307
blastp_kegg lcl|cit:102628030 1 341 + 341 Gaps:64 41.11 917 45.62 3e-63 uncharacterized LOC102628030
blastp_kegg lcl|cic:CICLE_v10000205mg 1 341 + 341 Gaps:76 41.24 919 45.38 2e-62 hypothetical protein
blastp_kegg lcl|sot:102582612 2 341 + 340 Gaps:85 25.19 1195 53.16 2e-62 uncharacterized LOC102582612
blastp_kegg lcl|pxb:103961877 1 342 + 342 Gaps:71 30.50 1118 52.79 3e-62 uncharacterized LOC103961877
blastp_kegg lcl|sly:101267888 2 341 + 340 Gaps:84 25.17 1192 53.33 6e-62 uncharacterized LOC101267888
blastp_kegg lcl|pop:POPTR_0002s09790g 1 341 + 341 Gaps:64 26.25 1276 50.15 3e-60 POPTRDRAFT_754724 DNA-binding family protein
blastp_uniprot_sprot sp|Q9LME6|MBD8_ARATH 13 341 + 329 Gaps:49 66.03 524 42.49 3e-49 Methyl-CpG-binding domain-containing protein 8 OS Arabidopsis thaliana GN MBD8 PE 2 SV 1

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 181 193 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
SMART 218 230 13 SM00384 none DNA binding domain with preference for A/T rich regions IPR017956
Pfam 181 191 11 PF02178 none AT hook motif IPR017956
Pfam 218 229 12 PF02178 none AT hook motif IPR017956

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting