Protein : Qrob_P0017670.2 Q. robur
Protein Identifier  ? Qrob_P0017670.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02934 - large subunit ribosomal protein L6e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 236  
Kegg Orthology  K02934
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103945833 1 235 + 235 Gaps:2 100.00 233 81.55 2e-132 60S ribosomal protein L6-1-like
blastp_kegg lcl|fve:101298186 1 235 + 235 Gaps:3 100.00 232 83.19 4e-132 60S ribosomal protein L6-like
blastp_kegg lcl|brp:103831880 3 235 + 233 Gaps:1 99.57 233 80.17 2e-130 60S ribosomal protein L6-2
blastp_kegg lcl|mtr:MTR_3g094860 1 235 + 235 Gaps:6 100.00 233 80.69 2e-130 60S ribosomal protein L6
blastp_kegg lcl|mtr:MTR_3g094570 1 235 + 235 Gaps:6 100.00 233 79.40 2e-128 60S ribosomal protein L6
blastp_kegg lcl|pmum:103327250 1 235 + 235 Gaps:2 100.00 233 85.41 6e-128 60S ribosomal protein L6-like
blastp_kegg lcl|brp:103842696 1 235 + 235 Gaps:1 100.00 234 78.63 9e-128 60S ribosomal protein L6-1
blastp_kegg lcl|brp:103872617 1 235 + 235 Gaps:1 100.00 234 78.21 5e-127 60S ribosomal protein L6-1
blastp_kegg lcl|rcu:RCOM_1526800 1 235 + 235 Gaps:2 100.00 233 84.12 7e-127 60S ribosomal protein L6 putative
blastp_kegg lcl|mtr:MTR_5g098090 1 235 + 235 Gaps:1 100.00 234 76.92 9e-127 60S ribosomal protein L6
blastp_pdb 3izr_G 17 235 + 219 Gaps:6 97.26 219 68.08 4e-100 mol:protein length:219 60S ribosomal protein L6 (L6e)
blastp_pdb 3u5i_E 61 235 + 175 Gaps:2 98.30 176 57.23 3e-56 mol:protein length:176 60S ribosomal protein L6-A
blastp_pdb 3u5e_E 61 235 + 175 Gaps:2 98.30 176 57.23 3e-56 mol:protein length:176 60S ribosomal protein L6-A
blastp_pdb 3o5h_F 61 235 + 175 Gaps:2 98.30 176 57.23 3e-56 mol:protein length:176 60S ribosomal protein L6-A
blastp_pdb 3o58_F 61 235 + 175 Gaps:2 98.30 176 57.23 3e-56 mol:protein length:176 60S ribosomal protein L6-A
blastp_pdb 3izs_G 61 235 + 175 Gaps:2 98.30 176 57.23 3e-56 mol:protein length:176 60S ribosomal protein rpL6 (L6e)
blastp_pdb 4a1d_E 53 235 + 183 Gaps:4 97.91 191 49.73 2e-55 mol:protein length:191 RPL6
blastp_pdb 4a1b_E 53 235 + 183 Gaps:4 97.91 191 49.73 2e-55 mol:protein length:191 RPL6
blastp_pdb 4a19_E 53 235 + 183 Gaps:4 97.91 191 49.73 2e-55 mol:protein length:191 RPL6
blastp_pdb 4a18_E 53 235 + 183 Gaps:4 97.91 191 49.73 2e-55 mol:protein length:191 RPL6
blastp_uniprot_sprot sp|P34091|RL6_MESCR 1 235 + 235 Gaps:1 100.00 234 81.20 9e-127 60S ribosomal protein L6 OS Mesembryanthemum crystallinum GN RPL6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C9C6|RL62_ARATH 3 235 + 233 Gaps:1 99.57 233 80.17 5e-115 60S ribosomal protein L6-2 OS Arabidopsis thaliana GN RPL6B PE 2 SV 1
blastp_uniprot_sprot sp|Q9C9C5|RL63_ARATH 3 235 + 233 Gaps:1 99.57 233 80.17 7e-115 60S ribosomal protein L6-3 OS Arabidopsis thaliana GN RPL6C PE 2 SV 1
blastp_uniprot_sprot sp|Q9FZ76|RL61_ARATH 3 235 + 233 Gaps:1 99.57 233 80.17 3e-111 60S ribosomal protein L6-1 OS Arabidopsis thaliana GN RPL6A PE 2 SV 1
blastp_uniprot_sprot sp|Q2YGT9|RL6_PIG 12 235 + 224 Gaps:34 85.92 284 47.95 5e-64 60S ribosomal protein L6 OS Sus scrofa GN RPL6 PE 2 SV 3
blastp_uniprot_sprot sp|Q58DQ3|RL6_BOVIN 12 235 + 224 Gaps:34 85.02 287 47.13 6e-63 60S ribosomal protein L6 OS Bos taurus GN RPL6 PE 2 SV 3
blastp_uniprot_sprot sp|P47911|RL6_MOUSE 12 235 + 224 Gaps:35 82.77 296 48.57 1e-62 60S ribosomal protein L6 OS Mus musculus GN Rpl6 PE 1 SV 3
blastp_uniprot_sprot sp|P21533|RL6_RAT 12 235 + 224 Gaps:35 82.21 298 48.16 3e-62 60S ribosomal protein L6 OS Rattus norvegicus GN Rpl6 PE 1 SV 5
blastp_uniprot_sprot sp|Q6QMZ4|RL6_CHILA 12 235 + 224 Gaps:34 84.72 288 47.54 4e-62 60S ribosomal protein L6 OS Chinchilla lanigera GN RPL6 PE 2 SV 3
blastp_uniprot_sprot sp|Q02878|RL6_HUMAN 12 235 + 224 Gaps:34 84.72 288 46.72 7e-61 60S ribosomal protein L6 OS Homo sapiens GN RPL6 PE 1 SV 3

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 128 235 108 PF01159 none Ribosomal protein L6e IPR000915
Pfam 2 53 52 PF03868 none Ribosomal protein L6, N-terminal domain IPR005568
PANTHER 12 235 224 PTHR10715 none none IPR000915
Coils 164 185 22 Coil none none none
Gene3D 88 175 88 G3DSA:2.30.30.30 none none IPR014722
SUPERFAMILY 89 178 90 SSF50104 none none IPR008991

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nEpiBC_3P Qrob_Chr01 1 v_1588_550 s_1AZJRA_1600 30,48 9,48 43,98 lod 2,3642 6,3
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6

0 Targeting