Protein : Qrob_P0017160.2 Q. robur
Protein Identifier  ? Qrob_P0017160.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=9) KOG1175//KOG1176//KOG1177//KOG1178//KOG1179//KOG1180//KOG1256 - Acyl-CoA synthetase [Lipid transport and metabolism]. // Acyl-CoA synthetase [Lipid transport and metabolism]. // Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]. // Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis transport and catabolism]. // Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]. // Acyl-CoA synthetase [Lipid transport and metabolism]. // Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 488  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

47 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101301149 17 487 + 471 Gaps:74 95.91 562 68.09 0.0 4-coumarate--CoA ligase-like 5-like
blastp_kegg lcl|pmum:103331482 21 487 + 467 Gaps:73 94.20 569 67.91 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|pper:PRUPE_ppa022057mg 25 487 + 463 Gaps:73 93.50 569 68.42 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0010s23680g 7 487 + 481 Gaps:69 92.99 585 65.07 0.0 POPTRDRAFT_805626 hypothetical protein
blastp_kegg lcl|vvi:100256391 24 487 + 464 Gaps:70 93.43 563 66.54 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|rcu:RCOM_0351030 18 487 + 470 Gaps:68 93.36 572 66.10 0.0 AMP dependent CoA ligase putative (EC:1.13.12.7)
blastp_kegg lcl|mdm:103410072 17 487 + 471 Gaps:73 94.55 569 67.66 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|pxb:103937856 17 487 + 471 Gaps:73 94.39 570 67.47 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|pxb:103951755 21 487 + 467 Gaps:72 94.02 569 67.48 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|cit:102610715 21 487 + 467 Gaps:70 93.82 566 64.97 0.0 4-coumarate--CoA ligase-like 5-like
blastp_pdb 3ni2_A 59 475 + 417 Gaps:52 85.26 536 38.51 4e-84 mol:protein length:536 4-coumarate:CoA ligase
blastp_pdb 3a9v_A 59 475 + 417 Gaps:52 85.26 536 38.51 4e-84 mol:protein length:536 4-coumarate--CoA ligase
blastp_pdb 3a9u_A 59 475 + 417 Gaps:52 85.26 536 38.51 4e-84 mol:protein length:536 4-coumarate--CoA ligase
blastp_pdb 3tsy_A 59 487 + 429 Gaps:58 48.72 979 37.95 1e-80 mol:protein length:979 Fusion Protein 4-coumarate--CoA ligase 1 Res
blastp_pdb 3qya_A 63 483 + 421 Gaps:58 80.93 582 35.03 7e-67 mol:protein length:582 Luciferase
blastp_pdb 3ies_A 63 470 + 408 Gaps:53 82.21 551 33.33 4e-62 mol:protein length:551 Luciferin 4-monooxygenase
blastp_pdb 3ier_A 63 470 + 408 Gaps:53 82.21 551 33.33 4e-62 mol:protein length:551 Luciferin 4-monooxygenase
blastp_pdb 3iep_A 63 470 + 408 Gaps:53 82.21 551 33.33 4e-62 mol:protein length:551 Luciferin 4-monooxygenase
blastp_pdb 3rix_A 63 470 + 408 Gaps:53 82.36 550 33.33 4e-62 mol:protein length:550 Luciferin 4-monooxygenase
blastp_pdb 1lci_A 63 470 + 408 Gaps:53 82.36 550 33.33 4e-62 mol:protein length:550 LUCIFERASE
blastp_uniprot_sprot sp|Q84P21|4CLL5_ARATH 27 476 + 450 Gaps:76 93.77 546 44.73 1e-139 4-coumarate--CoA ligase-like 5 OS Arabidopsis thaliana GN 4CLL5 PE 1 SV 2
blastp_uniprot_sprot sp|Q10S72|4CLL4_ORYSJ 59 483 + 425 Gaps:54 84.24 552 46.02 4e-130 4-coumarate--CoA ligase-like 4 OS Oryza sativa subsp. japonica GN 4CLL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q84P25|4CLL2_ARATH 59 483 + 425 Gaps:57 82.83 565 45.73 5e-130 4-coumarate--CoA ligase-like 2 OS Arabidopsis thaliana GN 4CLL2 PE 2 SV 2
blastp_uniprot_sprot sp|P0C5B6|4CLL4_ARATH 23 483 + 461 Gaps:76 95.45 550 41.33 2e-127 4-coumarate--CoA ligase-like 4 OS Arabidopsis thaliana GN 4CLL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q3E6Y4|4CLL3_ARATH 27 483 + 457 Gaps:72 94.38 552 40.12 6e-121 4-coumarate--CoA ligase-like 3 OS Arabidopsis thaliana GN 4CLL3 PE 2 SV 2
blastp_uniprot_sprot sp|Q84P26|4CLL8_ARATH 59 476 + 418 Gaps:51 82.73 550 43.52 5e-120 4-coumarate--CoA ligase-like 8 OS Arabidopsis thaliana GN 4CLL8 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M0X9|4CLL7_ARATH 59 483 + 425 Gaps:54 85.85 544 43.04 3e-118 4-coumarate--CoA ligase-like 7 OS Arabidopsis thaliana GN 4CLL7 PE 1 SV 1
blastp_uniprot_sprot sp|Q7F1X5|4CLL5_ORYSJ 54 487 + 434 Gaps:27 83.21 542 45.23 5e-112 4-coumarate--CoA ligase-like 5 OS Oryza sativa subsp. japonica GN 4CLL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DV32|4CLL1_ORYSJ 60 480 + 421 Gaps:48 83.88 552 41.25 2e-110 4-coumarate--CoA ligase-like 1 OS Oryza sativa subsp. japonica GN 4CLL1 PE 2 SV 2
blastp_uniprot_sprot sp|Q84P24|4CLL6_ARATH 59 475 + 417 Gaps:43 80.92 566 41.70 4e-110 4-coumarate--CoA ligase-like 6 OS Arabidopsis thaliana GN 4CLL6 PE 2 SV 2

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 59 481 423 SSF56801 none none none
Gene3D 164 317 154 G3DSA:3.40.50.980 none none none
Phobius 224 487 264 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 70 70 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 184 202 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 94 164 71 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 59 484 426 PTHR24096 none none none
Phobius 203 223 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 153 164 12 PS00455 none Putative AMP-binding domain signature. IPR020845
Phobius 71 93 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 321 376 56 G3DSA:2.30.38.10 none none none
Gene3D 382 482 101 G3DSA:3.30.300.30 none none none
Phobius 165 183 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 59 484 426 PTHR24096:SF131 none none none
Pfam 394 469 76 PF13193 none AMP-binding enzyme C-terminal domain IPR025110
Gene3D 59 163 105 G3DSA:3.40.50.980 none none none
Pfam 59 384 326 PF00501 none AMP-binding enzyme IPR000873

1 Localization

Analysis Start End Length
TMHMM 201 223 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting