Protein : Qrob_P0017140.2 Q. robur
Protein Identifier  ? Qrob_P0017140.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=11) KOG1175//KOG1176//KOG1177//KOG1179//KOG1180//KOG1256 - Acyl-CoA synthetase [Lipid transport and metabolism]. // Acyl-CoA synthetase [Lipid transport and metabolism]. // Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]. // Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]. // Acyl-CoA synthetase [Lipid transport and metabolism]. // Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 576  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

46 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101301149 27 575 + 549 Gaps:5 97.86 562 74.18 0.0 4-coumarate--CoA ligase-like 5-like
blastp_kegg lcl|pmum:103331482 26 575 + 550 Gaps:5 96.84 569 74.59 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|pper:PRUPE_ppa022057mg 26 575 + 550 Gaps:5 96.84 569 74.41 0.0 hypothetical protein
blastp_kegg lcl|vvi:100256391 25 575 + 551 Gaps:6 96.80 563 73.21 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|pxb:103951755 26 575 + 550 Gaps:6 96.66 569 73.82 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|pxb:103941762 26 575 + 550 Gaps:6 96.66 569 73.64 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|pxb:103941760 26 575 + 550 Gaps:6 96.66 569 73.64 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|cit:102610715 11 575 + 565 Gaps:4 99.12 566 68.98 0.0 4-coumarate--CoA ligase-like 5-like
blastp_kegg lcl|mdm:103410072 26 575 + 550 Gaps:6 96.66 569 73.64 0.0 4-coumarate--CoA ligase-like 5
blastp_kegg lcl|cic:CICLE_v10033676mg 11 575 + 565 Gaps:4 98.08 572 68.81 0.0 hypothetical protein
blastp_pdb 3ni2_A 52 563 + 512 Gaps:33 94.96 536 41.85 4e-110 mol:protein length:536 4-coumarate:CoA ligase
blastp_pdb 3a9v_A 52 563 + 512 Gaps:33 94.96 536 41.85 4e-110 mol:protein length:536 4-coumarate--CoA ligase
blastp_pdb 3a9u_A 52 563 + 512 Gaps:33 94.96 536 41.85 4e-110 mol:protein length:536 4-coumarate--CoA ligase
blastp_pdb 3tsy_A 51 563 + 513 Gaps:23 53.52 979 40.65 2e-102 mol:protein length:979 Fusion Protein 4-coumarate--CoA ligase 1 Res
blastp_pdb 3qya_A 68 558 + 491 Gaps:38 85.40 582 37.22 6e-84 mol:protein length:582 Luciferase
blastp_pdb 2d1t_A 73 558 + 486 Gaps:21 89.60 548 36.25 6e-80 mol:protein length:548 Luciferin 4-monooxygenase
blastp_pdb 3rix_A 73 568 + 496 Gaps:25 91.82 550 35.05 3e-79 mol:protein length:550 Luciferin 4-monooxygenase
blastp_pdb 1lci_A 73 568 + 496 Gaps:25 91.82 550 35.05 3e-79 mol:protein length:550 LUCIFERASE
blastp_pdb 1ba3_A 73 568 + 496 Gaps:25 91.82 550 35.05 3e-79 mol:protein length:550 LUCIFERASE
blastp_pdb 3ies_A 73 568 + 496 Gaps:25 91.65 551 35.05 4e-79 mol:protein length:551 Luciferin 4-monooxygenase
blastp_uniprot_sprot sp|Q84P21|4CLL5_ARATH 25 564 + 540 Gaps:17 97.25 546 47.46 5e-163 4-coumarate--CoA ligase-like 5 OS Arabidopsis thaliana GN 4CLL5 PE 1 SV 2
blastp_uniprot_sprot sp|P0C5B6|4CLL4_ARATH 24 564 + 541 Gaps:17 96.73 550 46.05 3e-160 4-coumarate--CoA ligase-like 4 OS Arabidopsis thaliana GN 4CLL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q84P25|4CLL2_ARATH 25 563 + 539 Gaps:25 94.51 565 46.63 1e-153 4-coumarate--CoA ligase-like 2 OS Arabidopsis thaliana GN 4CLL2 PE 2 SV 2
blastp_uniprot_sprot sp|Q3E6Y4|4CLL3_ARATH 24 571 + 548 Gaps:21 98.01 552 43.99 3e-152 4-coumarate--CoA ligase-like 3 OS Arabidopsis thaliana GN 4CLL3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M0X9|4CLL7_ARATH 25 571 + 547 Gaps:17 99.63 544 44.28 4e-152 4-coumarate--CoA ligase-like 7 OS Arabidopsis thaliana GN 4CLL7 PE 1 SV 1
blastp_uniprot_sprot sp|Q10S72|4CLL4_ORYSJ 47 564 + 518 Gaps:27 93.30 552 47.77 3e-150 4-coumarate--CoA ligase-like 4 OS Oryza sativa subsp. japonica GN 4CLL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q84P26|4CLL8_ARATH 24 564 + 541 Gaps:20 96.55 550 44.82 6e-149 4-coumarate--CoA ligase-like 8 OS Arabidopsis thaliana GN 4CLL8 PE 2 SV 2
blastp_uniprot_sprot sp|Q84P24|4CLL6_ARATH 24 563 + 540 Gaps:22 94.35 566 46.25 2e-148 4-coumarate--CoA ligase-like 6 OS Arabidopsis thaliana GN 4CLL6 PE 2 SV 2
blastp_uniprot_sprot sp|Q84P23|4CLL9_ARATH 26 575 + 550 Gaps:42 97.51 562 44.53 4e-136 4-coumarate--CoA ligase-like 9 OS Arabidopsis thaliana GN 4CLL9 PE 1 SV 2
blastp_uniprot_sprot sp|Q0DV32|4CLL1_ORYSJ 85 568 + 484 Gaps:13 88.22 552 45.79 2e-135 4-coumarate--CoA ligase-like 1 OS Oryza sativa subsp. japonica GN 4CLL1 PE 2 SV 2

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 389 464 76 G3DSA:2.30.38.10 none none none
SUPERFAMILY 68 567 500 SSF56801 none none none
Phobius 267 289 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 266 266 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 482 557 76 PF13193 none AMP-binding enzyme C-terminal domain IPR025110
PANTHER 33 572 540 PTHR24096:SF131 none none none
Phobius 290 575 286 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Gene3D 225 383 159 G3DSA:3.40.50.980 none none none
ProSitePatterns 219 230 12 PS00455 none Putative AMP-binding domain signature. IPR020845
PANTHER 33 572 540 PTHR24096 none none none
Gene3D 470 569 100 G3DSA:3.30.300.30 none none none
Gene3D 70 224 155 G3DSA:3.40.50.980 none none none
Pfam 68 472 405 PF00501 none AMP-binding enzyme IPR000873

2 Localization

Analysis Start End Length
TMHMM 120 142 22
TMHMM 266 288 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting