Protein : Qrob_P0017060.2 Q. robur
Protein Identifier  ? Qrob_P0017060.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) 3.2.1.142 - Limit dextrinase. Code Enzyme  EC:3.2.1.142
Gene Prediction Quality  validated Protein length 

Sequence

Length: 863  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0005975 carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000905mg 1 862 + 862 Gaps:34 92.44 965 81.28 0.0 hypothetical protein
blastp_kegg lcl|pmum:103332301 1 862 + 862 Gaps:36 92.45 967 79.98 0.0 pullulanase 1 chloroplastic
blastp_kegg lcl|pxb:103958418 11 862 + 852 Gaps:33 90.58 977 80.00 0.0 pullulanase 1 chloroplastic-like
blastp_kegg lcl|vvi:100247866 1 862 + 862 Gaps:32 99.78 896 78.75 0.0 pullulanase 1 chloroplastic-like
blastp_kegg lcl|pxb:103958437 11 862 + 852 Gaps:34 90.59 978 79.91 0.0 pullulanase 1 chloroplastic-like
blastp_kegg lcl|tcc:TCM_043341 18 862 + 845 Gaps:32 90.88 965 80.05 0.0 Limit dextrinase
blastp_kegg lcl|rcu:RCOM_0442550 4 862 + 859 Gaps:33 92.53 964 77.69 0.0 pullulanase putative (EC:3.2.1.41)
blastp_kegg lcl|cit:102625188 1 862 + 862 Gaps:36 92.67 969 77.28 0.0 pullulanase 1 chloroplastic-like
blastp_kegg lcl|fve:101304038 6 862 + 857 Gaps:32 92.22 964 77.84 0.0 pullulanase 1 chloroplastic-like
blastp_kegg lcl|gmx:100780405 3 862 + 860 Gaps:33 93.90 951 77.04 0.0 pullulanase 1 chloroplastic-like
blastp_pdb 2y5e_A 19 862 + 844 Gaps:36 99.32 884 61.85 0.0 mol:protein length:884 LIMIT DEXTRINASE
blastp_pdb 2y4s_A 19 862 + 844 Gaps:36 99.32 884 61.85 0.0 mol:protein length:884 LIMIT DEXTRINASE
blastp_pdb 2fhf_A 16 862 + 847 Gaps:106 82.83 1083 36.01 8e-166 mol:protein length:1083 pullulanase
blastp_pdb 2fhc_A 16 862 + 847 Gaps:106 82.83 1083 36.01 8e-166 mol:protein length:1083 pullulanase
blastp_pdb 2fhb_A 16 862 + 847 Gaps:106 82.83 1083 36.01 8e-166 mol:protein length:1083 pullulanase
blastp_pdb 2fh8_A 16 862 + 847 Gaps:106 82.83 1083 36.01 8e-166 mol:protein length:1083 pullulanase
blastp_pdb 2fh6_A 16 862 + 847 Gaps:106 82.83 1083 36.01 8e-166 mol:protein length:1083 pullulanase
blastp_pdb 2fgz_A 16 862 + 847 Gaps:106 82.83 1083 36.01 8e-166 mol:protein length:1083 pullulanase
blastp_pdb 2wan_A 133 763 + 631 Gaps:173 57.98 921 36.70 7e-73 mol:protein length:921 PULLULANASE
blastp_pdb 2e9b_B 121 819 + 699 Gaps:163 88.30 718 34.07 7e-61 mol:protein length:718 AmyX protein
blastp_uniprot_sprot sp|Q8GTR4|PULA1_ARATH 3 862 + 860 Gaps:32 92.44 965 70.40 0.0 Pullulanase 1 chloroplastic OS Arabidopsis thaliana GN PU1 PE 1 SV 2
blastp_uniprot_sprot sp|P07206|PULA_KLEPN 16 862 + 847 Gaps:114 82.29 1090 35.79 6e-160 Pullulanase OS Klebsiella pneumoniae GN pulA PE 1 SV 2
blastp_uniprot_sprot sp|P07811|PULA_ENTAE 16 785 + 770 Gaps:118 75.18 1096 36.65 1e-150 Pullulanase OS Enterobacter aerogenes GN pulA PE 1 SV 1
blastp_uniprot_sprot sp|O33840|PULA_THEMA 128 815 + 688 Gaps:183 70.11 843 32.99 2e-65 Pullulanase OS Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN pulA PE 1 SV 2
blastp_uniprot_sprot sp|C0SPA0|PULA_BACSU 121 819 + 699 Gaps:163 88.30 718 34.07 6e-61 Pullulanase OS Bacillus subtilis (strain 168) GN amyX PE 1 SV 1
blastp_uniprot_sprot sp|Q9M0S5|ISOA3_ARATH 138 678 + 541 Gaps:170 69.76 764 28.14 3e-13 Isoamylase 3 chloroplastic OS Arabidopsis thaliana GN ISA3 PE 1 SV 2
blastp_uniprot_sprot sp|B1JHX8|GLGX_YERPY 138 689 + 552 Gaps:94 80.36 662 25.38 8e-12 Glycogen debranching enzyme OS Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|Q664I3|GLGX_YERPS 138 689 + 552 Gaps:94 80.36 662 25.38 8e-12 Glycogen debranching enzyme OS Yersinia pseudotuberculosis serotype I (strain IP32953) GN glgX PE 3 SV 1
blastp_uniprot_sprot sp|A7FNX4|GLGX_YERP3 138 689 + 552 Gaps:94 80.36 662 25.38 9e-12 Glycogen debranching enzyme OS Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN glgX PE 3 SV 1
rpsblast_cdd gnl|CDD|178465 1 862 + 862 Gaps:32 92.16 970 79.08 0.0 PLN02877 PLN02877 alpha-amylase/limit dextrinase.

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 265 397 133 G3DSA:3.20.20.80 none none IPR013781
Gene3D 725 751 27 G3DSA:3.20.20.80 none none IPR013781
Gene3D 399 527 129 G3DSA:3.20.20.80 none none IPR013781
Gene3D 580 690 111 G3DSA:3.20.20.80 none none IPR013781
PANTHER 74 341 268 PTHR10357:SF99 none none none
PANTHER 364 859 496 PTHR10357:SF99 none none none
Pfam 138 222 85 PF02922 none Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IPR004193
SUPERFAMILY 753 862 110 SSF51011 none none none
PANTHER 74 341 268 PTHR10357 none none IPR015902
PANTHER 364 859 496 PTHR10357 none none IPR015902
SUPERFAMILY 236 750 515 SSF51445 none none IPR017853
SUPERFAMILY 8 132 125 SSF81296 none none IPR014756
Gene3D 137 264 128 G3DSA:2.60.40.10 none none IPR013783
Pfam 690 862 173 PF11852 none Domain of unknown function (DUF3372) IPR024561
SUPERFAMILY 131 240 110 SSF81296 none none IPR014756

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting