Protein : Qrob_P0016640.2 Q. robur
Protein Identifier  ? Qrob_P0016640.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K01164 - ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5] Code Enzyme  EC:3.1.26.5
Gene Prediction Quality  validated Protein length 

Sequence

Length: 859  
Kegg Orthology  K01164
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO:0001682 tRNA 5'-leader removal Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by RNase P.
GO:0004526 ribonuclease P activity Catalysis of the endonucleolytic cleavage of RNA, removing 5' extra nucleotides from tRNA precursor.

15 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101315187 6 858 + 853 Gaps:20 99.18 852 59.88 0.0 ribonucleases P/MRP protein subunit POP1-like
blastp_kegg lcl|mdm:103405923 6 858 + 853 Gaps:24 99.18 850 60.38 0.0 ribonucleases P/MRP protein subunit POP1
blastp_kegg lcl|pxb:103956891 13 858 + 846 Gaps:21 98.36 853 61.14 0.0 uncharacterized protein C05D11.9-like
blastp_kegg lcl|pxb:103956881 13 858 + 846 Gaps:21 98.36 853 61.14 0.0 uncharacterized protein C05D11.9-like
blastp_kegg lcl|pper:PRUPE_ppa001407mg 6 858 + 853 Gaps:38 99.16 836 62.61 0.0 hypothetical protein
blastp_kegg lcl|pmum:103327348 13 858 + 846 Gaps:39 98.32 835 62.97 0.0 uncharacterized protein C05D11.9
blastp_kegg lcl|tcc:TCM_004832 13 858 + 846 Gaps:9 98.26 860 59.88 0.0 Ribonucleases P/MRP protein subunit POP1 putative
blastp_kegg lcl|cic:CICLE_v10023744mg 4 858 + 855 Gaps:18 99.42 856 58.75 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1346560 4 858 + 855 Gaps:38 99.40 838 59.54 0.0 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G184700g 1 858 + 858 Gaps:36 99.89 881 53.75 0.0 hypothetical protein
blastp_uniprot_sprot sp|Q99575|POP1_HUMAN 14 591 + 578 Gaps:44 35.55 1024 28.85 4e-16 Ribonucleases P/MRP protein subunit POP1 OS Homo sapiens GN POP1 PE 1 SV 2
blastp_uniprot_sprot sp|Q11188|YPD9_CAEEL 17 175 + 159 Gaps:22 21.14 752 33.33 4e-06 Uncharacterized protein C05D11.9 OS Caenorhabditis elegans GN C05D11.9 PE 4 SV 2
rpsblast_cdd gnl|CDD|203558 22 177 + 156 Gaps:12 100.00 158 33.54 7e-27 pfam06978 POP1 Ribonucleases P/MRP protein subunit POP1. This family represents a conserved region approximately 150 residues long located towards the N-terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (EC:3.1.26.5). These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends.
rpsblast_cdd gnl|CDD|203866 505 590 + 86 Gaps:2 95.65 92 35.23 2e-16 pfam08170 POPLD POPLD (NUC188) domain. This domain is found in POP1-like nucleolar proteins.
rpsblast_kog gnl|CDD|38532 14 591 + 578 Gaps:34 51.31 688 19.26 4e-18 KOG3322 KOG3322 KOG3322 Ribonucleases P/MRP protein subunit [RNA processing and modification].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 22 176 155 PF06978 none Ribonucleases P/MRP protein subunit POP1 IPR009723
PANTHER 633 855 223 PTHR22731 none none none
PANTHER 11 242 232 PTHR22731 none none none
PANTHER 633 855 223 PTHR22731:SF3 none none none
PANTHER 258 596 339 PTHR22731:SF3 none none none
Pfam 505 581 77 PF08170 none POPLD (NUC188) domain IPR012590
PANTHER 258 596 339 PTHR22731 none none none
PANTHER 11 242 232 PTHR22731:SF3 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting