Protein : Qrob_P0016480.2 Q. robur
Protein Identifier  ? Qrob_P0016480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02974 - small subunit ribosomal protein S24e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 137  
Kegg Orthology  K02974
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103434141 1 136 + 136 none 100.00 136 94.85 8e-88 40S ribosomal protein S24-1
blastp_kegg lcl|pxb:103954436 1 136 + 136 none 100.00 136 94.85 2e-87 40S ribosomal protein S24-1
blastp_kegg lcl|mdm:103451008 1 136 + 136 none 100.00 136 94.85 2e-87 40S ribosomal protein S24-1
blastp_kegg lcl|cmo:103501023 1 136 + 136 none 99.27 137 94.12 3e-87 40S ribosomal protein S24-1
blastp_kegg lcl|cmo:103495842 1 136 + 136 none 99.27 137 94.12 6e-87 40S ribosomal protein S24-1
blastp_kegg lcl|csv:101226235 1 136 + 136 none 99.27 137 94.12 1e-86 40S ribosomal protein S24-2-like
blastp_kegg lcl|csv:101209776 1 136 + 136 none 99.27 137 94.12 1e-86 40S ribosomal protein S24-2-like
blastp_kegg lcl|pper:PRUPE_ppa013158mg 1 136 + 136 none 99.27 137 93.38 1e-86 hypothetical protein
blastp_kegg lcl|pmum:103318569 1 136 + 136 none 99.27 137 93.38 1e-86 40S ribosomal protein S24-1
blastp_kegg lcl|tcc:TCM_026404 1 134 + 134 none 100.00 134 94.78 2e-86 Ribosomal protein S24e family protein
blastp_pdb 3iz6_U 5 134 + 130 none 94.20 138 86.92 5e-78 mol:protein length:138 40S ribosomal protein S24 (S24e)
blastp_pdb 3u5g_Y 5 132 + 128 Gaps:2 94.81 135 62.50 7e-47 mol:protein length:135 40S ribosomal protein S24-A
blastp_pdb 3u5c_Y 5 132 + 128 Gaps:2 94.81 135 62.50 7e-47 mol:protein length:135 40S ribosomal protein S24-A
blastp_pdb 3j16_D 5 132 + 128 Gaps:2 94.81 135 62.50 7e-47 mol:protein length:135
blastp_pdb 3izb_U 5 132 + 128 Gaps:2 94.81 135 62.50 7e-47 mol:protein length:135 40S ribosomal protein S24
blastp_pdb 2xzn_P 5 126 + 122 Gaps:1 81.21 149 42.98 9e-27 mol:protein length:149 RPS24E
blastp_pdb 2xzm_P 5 126 + 122 Gaps:1 81.21 149 42.98 9e-27 mol:protein length:149 RPS24E
blastp_pdb 2v94_B 16 103 + 88 Gaps:1 81.31 107 33.33 7e-10 mol:protein length:107 30S RIBOSOMAL PROTEIN S24E
blastp_pdb 2v94_A 16 103 + 88 Gaps:1 81.31 107 33.33 7e-10 mol:protein length:107 30S RIBOSOMAL PROTEIN S24E
blastp_uniprot_sprot sp|Q8LC83|RS242_ARATH 1 132 + 132 none 99.25 133 87.88 1e-80 40S ribosomal protein S24-2 OS Arabidopsis thaliana GN RPS24B PE 2 SV 2
blastp_uniprot_sprot sp|Q9SS17|RS241_ARATH 1 132 + 132 none 99.25 133 90.91 5e-73 40S ribosomal protein S24-1 OS Arabidopsis thaliana GN RPS24A PE 2 SV 1
blastp_uniprot_sprot sp|Q962Q6|RS24_SPOFR 1 132 + 132 Gaps:1 99.24 132 65.65 2e-54 40S ribosomal protein S24 OS Spodoptera frugiperda GN RpS24 PE 2 SV 1
blastp_uniprot_sprot sp|Q90YQ0|RS24_ICTPU 5 132 + 128 Gaps:1 96.95 131 62.20 3e-49 40S ribosomal protein S24 OS Ictalurus punctatus GN rps24 PE 2 SV 1
blastp_uniprot_sprot sp|O42387|RS24_TAKRU 5 135 + 131 Gaps:3 96.97 132 64.06 1e-48 40S ribosomal protein S24 OS Takifugu rubripes GN rps24 PE 3 SV 1
blastp_uniprot_sprot sp|Q75K27|RS24_DICDI 1 115 + 115 none 91.27 126 65.22 5e-48 40S ribosomal protein S24 OS Dictyostelium discoideum GN rps24 PE 3 SV 1
blastp_uniprot_sprot sp|Q9W6X9|RS24_ORYLA 5 132 + 128 Gaps:1 96.21 132 59.84 8e-47 40S ribosomal protein S24 OS Oryzias latipes GN rps24 PE 2 SV 1
blastp_uniprot_sprot sp|O59865|RS24B_SCHPO 1 124 + 124 Gaps:3 91.79 134 60.98 8e-47 40S ribosomal protein S24-B OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rps24b PE 2 SV 3
blastp_uniprot_sprot sp|P0CX32|RS24B_YEAST 5 132 + 128 Gaps:2 94.81 135 62.50 2e-46 40S ribosomal protein S24-B OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPS24B PE 1 SV 1
blastp_uniprot_sprot sp|P0CX31|RS24A_YEAST 5 132 + 128 Gaps:2 94.81 135 62.50 2e-46 40S ribosomal protein S24-A OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPS24A PE 1 SV 1
rpsblast_cdd gnl|CDD|185426 5 132 + 128 none 96.97 132 59.38 2e-39 PTZ00071 PTZ00071 40S ribosomal protein S24 Provisional.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 6 108 103 G3DSA:3.30.70.330 none none IPR012677
ProSitePatterns 66 88 23 PS00529 none Ribosomal protein S24e signature. IPR018098
SUPERFAMILY 6 108 103 SSF54189 none none IPR012678
Pfam 24 106 83 PF01282 none Ribosomal protein S24e IPR001976
ProDom 14 86 73 PD006052 none RIBOSOMAL S24 40S RIBONUCLEOPROTEIN S24E 30S S24 CDNA RIKEN ACETYLATION IPR001976
PANTHER 1 136 136 PTHR10496 none none IPR001976

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 12   Mitochondrion 4 0.024 0.692 NON-PLANT 12