Protein : Qrob_P0016080.2 Q. robur
Protein Identifier  ? Qrob_P0016080.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=2) 1.3.5.6 - 9,9'-di-cis-zeta-carotene desaturase. Code Enzyme  EC:1.3.5.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 574  
Kegg Orthology  K00514
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016491 oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0016117 carotenoid biosynthetic process The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail.
GO:0016719 carotene 7,8-desaturase activity Catalysis of the reaction: neurosporene + donor-H2 + O2 = lycopene + acceptor + 2 H2O.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1428040 1 573 + 573 Gaps:14 60.89 964 84.84 0.0 Zeta-carotene desaturase chloroplast precursor putative (EC:1.14.99.30)
blastp_kegg lcl|pop:POPTR_0005s05230g 1 573 + 573 Gaps:16 100.00 589 84.38 0.0 hypothetical protein
blastp_kegg lcl|vvi:100245154 1 573 + 573 Gaps:16 100.00 583 85.08 0.0 zeta-carotene desaturase chloroplastic/chromoplastic-like
blastp_kegg lcl|pop:POPTR_0013s03470g 1 573 + 573 Gaps:17 100.00 582 84.19 0.0 POPTRDRAFT_806861 hypothetical protein
blastp_kegg lcl|pmum:103318575 1 573 + 573 Gaps:28 100.00 571 86.16 0.0 PmZDS zeta-carotene desaturase chloroplastic/chromoplastic
blastp_kegg lcl|pper:PRUPE_ppa003478mg 1 573 + 573 Gaps:28 100.00 571 86.16 0.0 hypothetical protein
blastp_kegg lcl|mdm:103434148 1 573 + 573 Gaps:22 100.00 571 85.11 0.0 zeta-carotene desaturase chloroplastic/chromoplastic-like
blastp_kegg lcl|mdm:103451012 1 573 + 573 Gaps:28 100.00 571 84.76 0.0 zeta-carotene desaturase chloroplastic/chromoplastic
blastp_kegg lcl|cit:102577969 1 573 + 573 Gaps:25 100.00 570 84.56 0.0 CitZDS ZDS
blastp_kegg lcl|cam:101493508 1 573 + 573 Gaps:16 99.83 582 82.10 0.0 zeta-carotene desaturase chloroplastic/chromoplastic-like
blastp_uniprot_sprot sp|Q9SMJ3|ZDS_CAPAN 20 573 + 554 Gaps:14 95.58 588 82.92 0.0 Zeta-carotene desaturase chloroplastic/chromoplastic OS Capsicum annuum GN ZDS PE 1 SV 1
blastp_uniprot_sprot sp|Q9FV46|ZDS_TARER 8 573 + 566 Gaps:21 97.61 587 82.37 0.0 Zeta-carotene desaturase chloroplastic/chromoplastic OS Tagetes erecta PE 2 SV 1
blastp_uniprot_sprot sp|Q9SE20|ZDS_SOLLC 2 573 + 572 Gaps:18 99.32 588 79.62 0.0 Zeta-carotene desaturase chloroplastic/chromoplastic OS Solanum lycopersicum GN ZDS PE 2 SV 1
blastp_uniprot_sprot sp|O49901|ZDS_NARPS 33 573 + 541 Gaps:14 95.64 574 83.42 0.0 Zeta-carotene desaturase chloroplastic/chromoplastic OS Narcissus pseudonarcissus GN ZDS1 PE 2 SV 1
blastp_uniprot_sprot sp|Q38893|ZDS_ARATH 22 573 + 552 Gaps:20 98.92 558 81.70 0.0 Zeta-carotene desaturase chloroplastic/chromoplastic OS Arabidopsis thaliana GN ZDS1 PE 1 SV 3
blastp_uniprot_sprot sp|Q9ZTP4|ZDS_MAIZE 62 552 + 491 Gaps:10 87.89 570 83.03 0.0 Zeta-carotene desaturase chloroplastic/chromoplastic OS Zea mays GN ZDS1 PE 2 SV 1
blastp_uniprot_sprot sp|P74306|ZDS_SYNY3 75 538 + 464 Gaps:10 96.93 489 65.82 0.0 Zeta-carotene desaturase OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN crtQ PE 3 SV 1
blastp_uniprot_sprot sp|Q9R6X4|ZDS_NOSS1 75 540 + 466 Gaps:9 99.16 479 61.89 0.0 Zeta-carotene desaturase OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN crtQ PE 3 SV 2
blastp_uniprot_sprot sp|Q31N27|ZDS_SYNE7 75 541 + 467 Gaps:9 98.96 481 61.13 0.0 Probable zeta-carotene desaturase OS Synechococcus elongatus (strain PCC 7942) GN zds PE 3 SV 1
blastp_uniprot_sprot sp|Q40406|CRTI_NARPS 65 556 + 492 Gaps:39 83.33 570 35.16 5e-77 Phytoene dehydrogenase chloroplastic/chromoplastic OS Narcissus pseudonarcissus GN PDS1 PE 1 SV 1
rpsblast_cdd gnl|CDD|178105 6 557 + 552 Gaps:15 97.89 569 79.89 0.0 PLN02487 PLN02487 zeta-carotene desaturase.
rpsblast_cdd gnl|CDD|131779 76 539 + 464 Gaps:10 100.00 474 72.57 0.0 TIGR02732 zeta_caro_desat 9 9'-di-cis-zeta-carotene desaturase. Carotene 7 8-desaturase also called zeta-carotene desaturase catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
rpsblast_cdd gnl|CDD|33157 76 541 + 466 Gaps:31 95.05 485 44.25 1e-111 COG3349 COG3349 Uncharacterized conserved protein [Function unknown].
rpsblast_cdd gnl|CDD|178222 57 548 + 492 Gaps:47 82.72 567 36.25 9e-73 PLN02612 PLN02612 phytoene desaturase.
rpsblast_cdd gnl|CDD|131778 76 539 + 464 Gaps:43 100.00 453 35.54 1e-72 TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and supposedly Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family excluded by this model is zeta-carotene desaturase another enzyme in the same pathway.
rpsblast_cdd gnl|CDD|201877 84 536 + 453 Gaps:40 99.32 444 23.13 4e-57 pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation these include various neurotransmitters neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants bacteria and protozoa oxidase spermidine and spermine to an aminobutyral diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase putrescine oxidase corticosteroid binding proteins and antibacterial glycoproteins.
rpsblast_cdd gnl|CDD|211821 77 538 + 462 Gaps:54 99.53 430 30.37 2e-46 TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
rpsblast_cdd gnl|CDD|180899 76 538 + 463 Gaps:98 98.39 434 23.89 7e-17 PRK07233 PRK07233 hypothetical protein Provisional.
rpsblast_cdd gnl|CDD|205628 79 145 + 67 Gaps:1 100.00 66 36.36 4e-12 pfam13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain.
rpsblast_cdd gnl|CDD|31425 76 309 + 234 Gaps:26 47.75 444 27.36 3e-11 COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism].

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 271 364 94 G3DSA:3.50.50.60 none none none
Gene3D 74 175 102 G3DSA:3.50.50.60 none none none
PRINTS 139 149 11 PR00419 none Adrenodoxin reductase family signature none
PRINTS 76 98 23 PR00419 none Adrenodoxin reductase family signature none
PRINTS 99 112 14 PR00419 none Adrenodoxin reductase family signature none
Gene3D 503 545 43 G3DSA:3.50.50.60 none none none
Pfam 84 536 453 PF01593 none Flavin containing amine oxidoreductase IPR002937
SUPERFAMILY 74 386 313 SSF51905 none none none
SUPERFAMILY 499 540 42 SSF51905 none none none
PANTHER 46 573 528 PTHR10742:SF227 none none none
PANTHER 46 573 528 PTHR10742 none none none
TIGRFAM 76 539 464 TIGR02732 "KEGG:00906+1.3.5.6","UniPathway:UPA00803" zeta_caro_desat: 9,9'-di-cis-zeta-carotene desaturase IPR014103

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Mitochondrion 5 0.052 0.562 NON-PLANT 30