Protein : Qrob_P0016010.2 Q. robur
Protein Identifier  ? Qrob_P0016010.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02984 - small subunit ribosomal protein S3Ae Gene Prediction Quality  validated
Protein length 

Sequence

Length: 264  
Kegg Orthology  K02984
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

28 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101230374 1 263 + 263 Gaps:2 100.00 261 90.80 4e-166 40S ribosomal protein S3a-like
blastp_kegg lcl|csv:101203444 1 263 + 263 Gaps:2 100.00 261 90.80 4e-166 40S ribosomal protein S3a-like
blastp_kegg lcl|tcc:TCM_026388 1 263 + 263 Gaps:2 100.00 261 90.42 2e-165 Ribosomal protein S3Ae
blastp_kegg lcl|cmo:103483683 1 263 + 263 Gaps:2 100.00 261 90.42 2e-165 40S ribosomal protein S3a
blastp_kegg lcl|tcc:TCM_020680 1 263 + 263 Gaps:3 100.00 262 90.84 3e-164 Ribosomal protein S3Ae isoform 1
blastp_kegg lcl|pmum:103318616 1 263 + 263 Gaps:3 100.00 260 91.54 6e-164 40S ribosomal protein S3a-2
blastp_kegg lcl|csv:101208040 1 263 + 263 Gaps:3 100.00 260 90.77 3e-163 40S ribosomal protein S3a-like
blastp_kegg lcl|csv:101223197 1 263 + 263 Gaps:3 100.00 260 90.77 3e-163 40S ribosomal protein S3a-like
blastp_kegg lcl|cmo:103491239 1 263 + 263 Gaps:3 100.00 260 90.38 4e-163 40S ribosomal protein S3a-like
blastp_kegg lcl|cam:101512410 1 263 + 263 Gaps:2 100.00 261 88.89 6e-163 40S ribosomal protein S3a-like
blastp_pdb 3u5g_B 1 251 + 251 Gaps:1 98.82 255 60.32 3e-107 mol:protein length:255 40S ribosomal protein S1-A
blastp_pdb 3u5c_B 1 251 + 251 Gaps:1 98.82 255 60.32 3e-107 mol:protein length:255 40S ribosomal protein S1-A
blastp_pdb 2xzn_4 22 243 + 222 Gaps:6 84.53 265 47.32 7e-67 mol:protein length:265 40S RIBOSOMAL PROTEIN S3A
blastp_pdb 2xzm_4 22 243 + 222 Gaps:6 84.53 265 47.32 7e-67 mol:protein length:265 40S RIBOSOMAL PROTEIN S3A
blastp_uniprot_sprot sp|Q42262|RS3A2_ARATH 1 263 + 263 Gaps:3 100.00 262 88.55 5e-162 40S ribosomal protein S3a-2 OS Arabidopsis thaliana GN RPS3AB PE 2 SV 3
blastp_uniprot_sprot sp|Q8GTE3|RS3A_CICAR 1 263 + 263 Gaps:2 100.00 261 86.97 1e-161 40S ribosomal protein S3a OS Cicer arietinum PE 1 SV 1
blastp_uniprot_sprot sp|P49198|RS3A_HELAN 1 245 + 245 none 94.23 260 90.20 6e-160 40S ribosomal protein S3a OS Helianthus annuus GN RPS3A PE 2 SV 2
blastp_uniprot_sprot sp|Q9MBB3|RS3A_DAUCA 1 263 + 263 Gaps:2 100.00 261 87.36 1e-159 40S ribosomal protein S3a OS Daucus carota GN cyc07 PE 2 SV 1
blastp_uniprot_sprot sp|A5B4K1|RS3A1_VITVI 1 263 + 263 Gaps:2 100.00 261 86.59 2e-159 40S ribosomal protein S3a-1 OS Vitis vinifera GN GSVIVT00020038001 PE 3 SV 1
blastp_uniprot_sprot sp|Q285L8|RS3A_TOBAC 1 259 + 259 none 99.23 261 85.71 7e-158 40S ribosomal protein S3a OS Nicotiana tabacum GN cyc07 PE 1 SV 1
blastp_uniprot_sprot sp|Q9CAV0|RS3A1_ARATH 1 263 + 263 Gaps:3 100.00 262 86.26 8e-158 40S ribosomal protein S3a-1 OS Arabidopsis thaliana GN RPS3AA PE 1 SV 3
blastp_uniprot_sprot sp|P33444|RS3A_CATRO 1 263 + 263 Gaps:4 100.00 261 85.82 4e-157 40S ribosomal protein S3a OS Catharanthus roseus GN RPS3A PE 2 SV 4
blastp_uniprot_sprot sp|P49396|RS3A_BRACM 1 263 + 263 Gaps:5 100.00 262 87.02 5e-154 40S ribosomal protein S3a OS Brassica campestris GN RPS3A PE 2 SV 2
blastp_uniprot_sprot sp|P49397|RS3A_ORYSJ 1 255 + 255 Gaps:1 97.71 262 83.20 8e-151 40S ribosomal protein S3a OS Oryza sativa subsp. japonica GN RPS3A PE 2 SV 2
rpsblast_cdd gnl|CDD|201552 12 222 + 211 Gaps:16 100.00 195 57.44 4e-78 pfam01015 Ribosomal_S3Ae Ribosomal S3Ae family.
rpsblast_cdd gnl|CDD|32074 10 233 + 224 Gaps:17 96.73 214 45.89 7e-55 COG1890 RPS1A Ribosomal protein S3AE [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|179733 19 222 + 204 Gaps:16 92.61 203 36.17 1e-33 PRK04057 PRK04057 30S ribosomal protein S3Ae Validated.
rpsblast_kog gnl|CDD|36841 2 248 + 247 Gaps:3 98.80 249 66.26 3e-92 KOG1628 KOG1628 KOG1628 40S ribosomal protein S3A [Translation ribosomal structure and biogenesis].

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 1 246 246 PTHR11830 none none none
Hamap 1 261 261 MF_03122 none 40S ribosomal protein S1 [RPS3A]. IPR027500
Pfam 12 222 211 PF01015 none Ribosomal S3Ae family IPR001593
ProSitePatterns 61 73 13 PS01191 none Ribosomal protein S3Ae signature. IPR018281

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting