Protein : Qrob_P0015490.2 Q. robur
Protein Identifier  ? Qrob_P0015490.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=10) PTHR31920:SF15 - B3 DOMAIN-CONTAINING PROTEIN REM20-RELATED (PTHR31920:SF15) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 348  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103340001 10 347 + 338 Gaps:46 99.36 312 39.35 8e-51 putative B3 domain-containing protein Os03g0621600
blastp_kegg lcl|vvi:100255179 12 344 + 333 Gaps:66 96.67 390 35.01 8e-50 putative B3 domain-containing protein Os03g0621600-like
blastp_kegg lcl|pper:PRUPE_ppa009270mg 10 347 + 338 Gaps:59 99.33 299 38.38 5e-41 hypothetical protein
blastp_kegg lcl|pxb:103965212 12 344 + 333 Gaps:49 81.23 357 36.21 7e-37 B3 domain-containing protein Os01g0723500-like
blastp_kegg lcl|fve:101304142 9 257 + 249 Gaps:29 96.67 240 40.52 3e-34 B3 domain-containing protein LOC_Os12g40080-like
blastp_kegg lcl|pmum:103326182 13 126 + 114 Gaps:2 37.84 296 53.57 1e-28 B3 domain-containing protein Os01g0723500-like
blastp_kegg lcl|mus:103975948 12 345 + 334 Gaps:32 91.78 353 29.63 2e-28 B3 domain-containing protein Os01g0723500-like
blastp_kegg lcl|fve:101308012 15 346 + 332 Gaps:103 96.85 508 34.76 2e-28 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|pper:PRUPE_ppb025337mg 1 120 + 120 Gaps:4 72.50 160 53.45 4e-28 hypothetical protein
blastp_kegg lcl|pda:103722010 12 344 + 333 Gaps:39 91.22 353 29.50 1e-27 B3 domain-containing protein Os01g0723500-like
blastp_pdb 1yel_A 29 111 + 83 Gaps:2 77.88 104 39.51 9e-10 mol:protein length:104 At1g16640
blastp_uniprot_sprot sp|Q8S2E6|Y1235_ORYSJ 13 344 + 332 Gaps:83 90.30 402 27.55 3e-25 B3 domain-containing protein Os01g0723500 OS Oryza sativa subsp. japonica GN Os01g0723500 PE 3 SV 1
blastp_uniprot_sprot sp|Q851V5|Y3216_ORYSJ 16 342 + 327 Gaps:101 65.50 1029 31.01 5e-24 Putative B3 domain-containing protein Os03g0621600 OS Oryza sativa subsp. japonica GN Os03g0621600 PE 3 SV 1
blastp_uniprot_sprot sp|Q8L3W1|VRN1_ARATH 28 344 + 317 Gaps:67 93.26 341 28.30 8e-21 B3 domain-containing transcription factor VRN1 OS Arabidopsis thaliana GN VRN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q10GM3|Y3222_ORYSJ 17 330 + 314 Gaps:50 81.48 378 30.19 4e-19 B3 domain-containing protein Os03g0622200 OS Oryza sativa subsp. japonica GN Os03g0622200 PE 2 SV 1
blastp_uniprot_sprot sp|Q5JNA1|Y1237_ORYSJ 17 125 + 109 Gaps:12 15.72 719 38.94 3e-17 B3 domain-containing protein Os03g0120900 OS Oryza sativa subsp. japonica GN Os01g0723700 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FGD2|Y5698_ARATH 13 132 + 120 Gaps:7 36.83 334 39.84 7e-15 Putative B3 domain-containing protein At5g66980 OS Arabidopsis thaliana GN At5g66980 PE 3 SV 1
blastp_uniprot_sprot sp|Q851V1|Y3160_ORYSJ 2 344 + 343 Gaps:65 96.08 306 28.57 8e-15 Putative B3 domain-containing protein Os03g0621600 OS Oryza sativa subsp. japonica GN Os03g0621600 PE 3 SV 1
blastp_uniprot_sprot sp|Q2R9D2|Y1176_ORYSJ 28 344 + 317 Gaps:57 85.71 406 24.71 1e-14 B3 domain-containing protein Os11g0197600 OS Oryza sativa subsp. japonica GN Os11g0197600 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RYD1|REM16_ARATH 17 329 + 313 Gaps:59 82.49 337 30.22 2e-14 B3 domain-containing protein REM16 OS Arabidopsis thaliana GN REM16 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QMT6|Y1208_ORYSJ 16 337 + 322 Gaps:45 61.02 490 26.42 3e-12 B3 domain-containing protein LOC_Os12g40080 OS Oryza sativa subsp. japonica GN Os12g0591400 PE 3 SV 1
rpsblast_cdd gnl|CDD|197383 15 344 + 330 Gaps:16 100.00 98 48.98 1e-12 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.
rpsblast_cdd gnl|CDD|202217 17 346 + 330 Gaps:22 100.00 97 45.36 3e-10 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 17 345 + 329 Gaps:16 100.00 96 42.71 3e-09 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 14 113 100 SSF101936 none none IPR015300
SMART 248 346 99 SM01019 none B3 DNA binding domain IPR003340
SMART 17 109 93 SM01019 none B3 DNA binding domain IPR003340
PANTHER 15 198 184 PTHR31920 none none none
PANTHER 238 343 106 PTHR31920 none none none
ProSiteProfiles 29 109 81 PS50863 none B3 DNA-binding domain profile. IPR003340
ProSiteProfiles 247 346 100 PS50863 none B3 DNA-binding domain profile. IPR003340
PANTHER 15 198 184 PTHR31920:SF15 none none none
PANTHER 238 343 106 PTHR31920:SF15 none none none
Gene3D 13 111 99 G3DSA:2.40.330.10 none none IPR015300
Gene3D 243 346 104 G3DSA:2.40.330.10 none none IPR015300
SUPERFAMILY 243 346 104 SSF101936 none none IPR015300
Pfam 248 345 98 PF02362 none B3 DNA binding domain IPR003340
Pfam 28 107 80 PF02362 none B3 DNA binding domain IPR003340

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting