Protein : Qrob_P0015360.2 Q. robur
Protein Identifier  ? Qrob_P0015360.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=15) 2.7.7.49 - RNA-directed DNA polymerase. Code Enzyme  EC:2.7.7.49
Gene Prediction Quality  validated Protein length 

Sequence

Length: 691  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0006397 mRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103325122 1 682 + 682 Gaps:4 100.00 686 79.15 0.0 uncharacterized mitochondrial protein ymf11
blastp_kegg lcl|vvi:100252074 1 685 + 685 Gaps:7 99.27 689 78.51 0.0 uncharacterized LOC100252074
blastp_kegg lcl|tcc:TCM_024930 42 683 + 642 Gaps:9 94.35 690 79.11 0.0 Intron maturase type II family protein
blastp_kegg lcl|cam:101514611 1 682 + 682 Gaps:12 99.13 688 76.39 0.0 uncharacterized LOC101514611
blastp_kegg lcl|rcu:RCOM_0632970 1 687 + 687 Gaps:13 99.56 681 77.88 0.0 RNA binding protein putative
blastp_kegg lcl|gmx:100810812 1 682 + 682 Gaps:12 99.13 686 74.41 0.0 uncharacterized LOC100810812
blastp_kegg lcl|cmo:103487661 1 678 + 678 Gaps:15 99.43 697 73.16 0.0 uncharacterized mitochondrial protein ymf11
blastp_kegg lcl|pxb:103951343 39 684 + 646 Gaps:1 97.44 664 76.51 0.0 uncharacterized mitochondrial protein ymf11
blastp_kegg lcl|ath:AT1G30010 2 684 + 683 Gaps:25 97.61 711 72.48 0.0 protein NUCLEAR MATURASE 1
blastp_kegg lcl|csv:101211527 1 678 + 678 Gaps:15 99.43 697 73.74 0.0 uncharacterized LOC101211527
blastp_uniprot_sprot sp|P38456|YMF11_MARPO 164 624 + 461 Gaps:133 64.48 732 27.12 1e-37 Uncharacterized mitochondrial protein ymf11 OS Marchantia polymorpha GN YMF11 PE 4 SV 1
blastp_uniprot_sprot sp|P38478|YMF40_MARPO 161 567 + 407 Gaps:66 74.70 502 28.80 2e-28 Uncharacterized mitochondrial protein ymf40 OS Marchantia polymorpha GN YMF40 PE 4 SV 1
blastp_uniprot_sprot sp|P0A3U1|LTRA_LACLM 161 552 + 392 Gaps:74 61.77 599 27.57 4e-28 Group II intron-encoded protein LtrA OS Lactococcus lactis subsp. cremoris (strain MG1363) GN ltrA PE 1 SV 1
blastp_uniprot_sprot sp|P0A3U0|LTRA_LACLC 161 552 + 392 Gaps:74 61.77 599 27.57 4e-28 Group II intron-encoded protein LtrA OS Lactococcus lactis subsp. cremoris GN ltrA PE 1 SV 1
blastp_uniprot_sprot sp|Q47688|YKFC_ECOLI 161 472 + 312 Gaps:64 70.74 376 31.20 2e-23 Putative uncharacterized protein YkfC OS Escherichia coli (strain K12) GN ykfC PE 5 SV 2
blastp_uniprot_sprot sp|P05511|YMC6_SCHPO 164 568 + 405 Gaps:91 46.10 807 26.88 3e-23 Uncharacterized 91 kDa protein in cob intron OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN SPMIT.06 PE 4 SV 4
blastp_uniprot_sprot sp|B1N1A3|NICA_PSEPU 77 577 + 501 Gaps:97 76.38 618 24.36 2e-21 Putative nicotine oxidoreductase OS Pseudomonas putida GN nicA PE 4 SV 1
blastp_uniprot_sprot sp|P03875|AI1M_YEAST 164 561 + 398 Gaps:73 44.72 834 24.66 1e-19 Putative COX1/OXI3 intron 1 protein OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN aI1 PE 1 SV 2
blastp_uniprot_sprot sp|P03876|AI2M_YEAST 164 559 + 396 Gaps:65 43.44 854 22.64 1e-16 Putative COX1/OXI3 intron 2 protein OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN aI2 PE 1 SV 2
rpsblast_cdd gnl|CDD|73157 161 438 + 278 Gaps:73 92.48 226 43.06 2e-46 cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements which lack long terminal repeats (LTRs)..
rpsblast_cdd gnl|CDD|33153 165 298 + 134 Gaps:6 42.07 328 24.64 9e-07 COG3344 COG3344 Retron-type reverse transcriptase [DNA replication recombination and repair].
rpsblast_kog gnl|CDD|39965 164 576 + 413 Gaps:65 48.24 796 25.00 4e-28 KOG4768 KOG4768 KOG4768 Mitochondrial mRNA maturase [RNA processing and modification].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 293 339 47 SSF56672 none none none
SUPERFAMILY 162 246 85 SSF56672 none none none
SUPERFAMILY 375 445 71 SSF56672 none none none
Pfam 467 572 106 PF01348 none Type II intron maturase IPR024937
Pfam 161 434 274 PF00078 none Reverse transcriptase (RNA-dependent DNA polymerase) IPR000477

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 30   Mitochondrion 3 0.026 0.827 NON-PLANT 30