Protein : Qrob_P0014460.2 Q. robur
Protein Identifier  ? Qrob_P0014460.2 Organism . Name  Quercus robur
Score  85.0 Score Type  egn
Protein Description  (M=108) PF00847 - AP2 domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 237  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0012s13870g 34 236 + 203 Gaps:14 78.04 255 72.36 8e-93 POPTRDRAFT_570519 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa010935mg 33 236 + 204 Gaps:13 84.28 229 71.50 2e-89 hypothetical protein
blastp_kegg lcl|pmum:103333423 33 236 + 204 Gaps:13 72.01 268 72.02 9e-88 dehydration-responsive element-binding protein 1B
blastp_kegg lcl|sly:101263490 18 236 + 219 Gaps:21 96.59 205 68.18 8e-86 CBF3 dehydration-responsive element-binding protein 1C-like
blastp_kegg lcl|sot:102577707 34 236 + 203 Gaps:17 85.32 218 69.89 2e-85 CBF3 AP2 domain CBF protein
blastp_kegg lcl|pxb:103960521 32 235 + 204 Gaps:11 87.33 221 67.36 3e-83 dehydration-responsive element-binding protein 1D-like
blastp_kegg lcl|cmo:103484041 35 234 + 200 Gaps:12 88.68 212 72.34 4e-83 dehydration-responsive element-binding protein 1A
blastp_kegg lcl|rcu:RCOM_1497560 1 236 + 236 Gaps:20 100.00 236 60.59 5e-83 Dehydration-responsive element-binding protein 1A putative
blastp_kegg lcl|fve:101298019 20 236 + 217 Gaps:11 88.28 256 61.50 7e-83 dehydration-responsive element-binding protein 1F-like
blastp_kegg lcl|pop:POPTR_0015s13830g 35 236 + 202 Gaps:19 79.44 248 68.02 1e-82 POPTRDRAFT_666968 hypothetical protein
blastp_pdb 3gcc_A 64 119 + 56 Gaps:1 81.43 70 54.39 2e-11 mol:protein length:70 ATERF1
blastp_pdb 2gcc_A 64 119 + 56 Gaps:1 81.43 70 54.39 2e-11 mol:protein length:70 ATERF1
blastp_pdb 1gcc_A 64 119 + 56 Gaps:1 90.48 63 54.39 2e-11 mol:protein length:63 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
blastp_uniprot_sprot sp|Q9FJ93|DRE1D_ARATH 36 234 + 199 Gaps:4 87.95 224 56.35 4e-70 Dehydration-responsive element-binding protein 1D OS Arabidopsis thaliana GN DREB1D PE 2 SV 1
blastp_uniprot_sprot sp|Q9SYS6|DRE1C_ARATH 42 234 + 193 Gaps:13 87.04 216 61.70 2e-69 Dehydration-responsive element-binding protein 1C OS Arabidopsis thaliana GN DREB1C PE 2 SV 2
blastp_uniprot_sprot sp|Q9M0L0|DRE1A_ARATH 26 234 + 209 Gaps:20 94.91 216 61.46 2e-68 Dehydration-responsive element-binding protein 1A OS Arabidopsis thaliana GN DREB1A PE 1 SV 2
blastp_uniprot_sprot sp|P93835|DRE1B_ARATH 42 234 + 193 Gaps:19 88.26 213 62.77 2e-66 Dehydration-responsive element-binding protein 1B OS Arabidopsis thaliana GN DREB1B PE 2 SV 2
blastp_uniprot_sprot sp|Q9LN86|DRE1F_ARATH 35 234 + 200 Gaps:13 99.04 209 51.69 8e-63 Dehydration-responsive element-binding protein 1F OS Arabidopsis thaliana GN DREB1F PE 2 SV 1
blastp_uniprot_sprot sp|Q9SGJ6|DRE1E_ARATH 35 234 + 200 Gaps:33 100.00 181 56.35 2e-60 Dehydration-responsive element-binding protein 1E OS Arabidopsis thaliana GN DREB1E PE 2 SV 1
blastp_uniprot_sprot sp|Q8H273|DRE1E_ORYSJ 37 234 + 198 Gaps:29 89.04 219 56.41 2e-52 Dehydration-responsive element-binding protein 1E OS Oryza sativa subsp. japonica GN DREB1E PE 2 SV 1
blastp_uniprot_sprot sp|A2XWL6|DRE1E_ORYSI 37 234 + 198 Gaps:29 89.04 219 56.41 2e-52 Dehydration-responsive element-binding protein 1E OS Oryza sativa subsp. indica GN DREB1E PE 3 SV 1
blastp_uniprot_sprot sp|Q8S9Z5|DRE1F_ORYSJ 47 215 + 169 Gaps:11 73.97 219 57.41 9e-52 Dehydration-responsive element-binding protein 1F OS Oryza sativa subsp. japonica GN DREB1F PE 3 SV 1
blastp_uniprot_sprot sp|A2WZI4|DRE1F_ORYSI 47 215 + 169 Gaps:11 73.97 219 57.41 9e-52 Dehydration-responsive element-binding protein 1F OS Oryza sativa subsp. indica GN DREB1F PE 2 SV 1
rpsblast_cdd gnl|CDD|197689 64 119 + 56 none 87.50 64 64.29 7e-22 smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
rpsblast_cdd gnl|CDD|28902 64 122 + 59 none 96.72 61 64.41 3e-20 cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE) a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1 which is involved in stress response contain a single copy of the AP2 domain. APETALA2-like proteins which play a role in plant development contain two copies..
rpsblast_cdd gnl|CDD|201470 62 112 + 51 Gaps:4 100.00 53 50.94 7e-11 pfam00847 AP2 AP2 domain. This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 63 122 60 SSF54171 none none IPR016177
PANTHER 24 236 213 PTHR31839 none none none
PANTHER 24 236 213 PTHR31839:SF0 none none none
ProSiteProfiles 63 120 58 PS51032 none AP2/ERF domain profile. IPR001471
PRINTS 64 75 12 PR00367 none Ethylene responsive element binding protein signature IPR001471
PRINTS 86 102 17 PR00367 none Ethylene responsive element binding protein signature IPR001471
SMART 63 126 64 SM00380 none DNA-binding domain in plant proteins such as APETALA2 and EREBPs IPR001471
Pfam 62 112 51 PF00847 none AP2 domain IPR001471
Gene3D 63 122 60 G3DSA:3.30.730.10 none none IPR001471

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

0 Targeting