Protein : Qrob_P0014320.2 Q. robur
Protein Identifier  ? Qrob_P0014320.2 Organism . Name  Quercus robur
Score  63.0 Score Type  egn
Protein Description  (M=1) KOG1883//KOG3561//KOG3598 - Cofactor required for Sp1 transcriptional activation subunit 3 [Transcription]. // Aryl-hydrocarbon receptor nuclear translocator [Transcription]. // Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 876  
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Protein Sequence Displayer

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0 Synonyms

0 GO Terms

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101300963 1 875 + 875 Gaps:38 100.00 867 83.04 0.0 uncharacterized protein LOC101300963
blastp_kegg lcl|mdm:103440270 1 875 + 875 Gaps:43 100.00 866 82.10 0.0 transcriptional corepressor SEUSS
blastp_kegg lcl|pmum:103333250 1 875 + 875 Gaps:30 100.00 867 81.89 0.0 transcriptional corepressor SEUSS
blastp_kegg lcl|pper:PRUPE_ppa001261mg 1 875 + 875 Gaps:29 100.00 868 82.14 0.0 hypothetical protein
blastp_kegg lcl|pxb:103960533 1 875 + 875 Gaps:45 100.00 856 81.54 0.0 probable transcriptional regulator SLK2
blastp_kegg lcl|mdm:103439721 1 875 + 875 Gaps:40 100.00 859 81.37 0.0 transcriptional corepressor SEUSS-like
blastp_kegg lcl|tcc:TCM_015099 1 875 + 875 Gaps:58 100.00 879 79.52 0.0 SEUSS-like 2
blastp_kegg lcl|vvi:100265879 1 875 + 875 Gaps:37 100.00 864 77.31 0.0 uncharacterized LOC100265879
blastp_kegg lcl|pop:POPTR_0012s13680g 1 875 + 875 Gaps:22 100.00 869 79.98 0.0 hypothetical protein
blastp_kegg lcl|cit:102621625 1 875 + 875 Gaps:37 99.42 867 80.63 0.0 transcriptional corepressor SEUSS-like
blastp_uniprot_sprot sp|Q8W234|SEUSS_ARATH 307 580 + 274 Gaps:5 30.67 877 60.59 1e-104 Transcriptional corepressor SEUSS OS Arabidopsis thaliana GN SEU PE 1 SV 1
blastp_uniprot_sprot sp|O74364|ADN1_SCHPO 309 600 + 292 Gaps:45 67.26 391 27.76 4e-11 Adhesion defective protein 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN adn1 PE 3 SV 1
rpsblast_cdd gnl|CDD|201982 313 575 + 263 Gaps:40 99.57 230 35.37 2e-65 pfam01803 LIM_bind LIM-domain binding protein. The LIM-domain binding protein binds to the LIM domain pfam00412 of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development. The Drosophila protein Chip is required for segmentation and activity of a remote wing margin enhancer. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions.
rpsblast_cdd gnl|CDD|205952 201 298 + 98 Gaps:54 27.80 820 34.21 1e-13 pfam13779 DUF4175 Domain of unknown function (DUF4175).
rpsblast_cdd gnl|CDD|204310 84 304 + 221 Gaps:28 30.72 804 27.53 2e-09 pfam09770 PAT1 Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.
rpsblast_cdd gnl|CDD|181920 222 296 + 75 Gaps:6 17.57 387 38.24 7e-09 PRK09510 tolA cell envelope integrity inner membrane protein TolA Provisional.
rpsblast_cdd gnl|CDD|151935 181 292 + 112 Gaps:13 25.84 476 38.21 6e-08 pfam11498 Activator_LAG-3 Transcriptional activator LAG-3. The C.elegans Notch pathway involved in the control of growth differentiation and patterning in animal development relies on either of the receptors GLP-1 or LIN-12. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein LAG-1.
rpsblast_cdd gnl|CDD|150314 136 318 + 183 Gaps:27 27.73 768 38.50 8e-08 pfam09606 Med15 ARC105 or Med15 subunit of Mediator complex non-fungal. The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition Med15 is a critical transducer of gene activation signals that control early metazoan development.
rpsblast_cdd gnl|CDD|178962 204 305 + 102 Gaps:19 28.08 438 35.77 2e-07 PRK00286 xseA exodeoxyribonuclease VII large subunit Reviewed.
rpsblast_cdd gnl|CDD|182344 196 306 + 111 none 8.19 1355 31.53 6e-07 PRK10263 PRK10263 DNA translocase FtsK Provisional.
rpsblast_kog gnl|CDD|38804 51 325 + 275 Gaps:31 11.80 2220 22.90 2e-15 KOG3598 KOG3598 KOG3598 Thyroid hormone receptor-associated protein complex subunit TRAP230 [Transcription].
rpsblast_kog gnl|CDD|37094 205 326 + 122 Gaps:20 6.99 1517 34.91 9e-10 KOG1883 KOG1883 KOG1883 Cofactor required for Sp1 transcriptional activation subunit 3 [Transcription].
rpsblast_kog gnl|CDD|38769 22 298 + 277 Gaps:14 32.75 803 19.77 3e-07 KOG3561 KOG3561 KOG3561 Aryl-hydrocarbon receptor nuclear translocator [Transcription].

2 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 313 575 263 PF01803 none LIM-domain binding protein IPR029005
Coils 257 296 40 Coil none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 46   Mitochondrion 4 0.011 0.801 NON-PLANT 46