Protein : Qrob_P0013970.2 Q. robur
Protein Identifier  ? Qrob_P0013970.2 Organism . Name  Quercus robur
Protein Description  (M=108) PF00847 - AP2 domain Alias (in v1)  Qrob_P0236220.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 189  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sly:544260 10 187 + 178 Gaps:45 98.57 210 50.72 3e-50 ethylene response factor 2
blastp_kegg lcl|fve:101300501 1 184 + 184 Gaps:62 98.40 250 46.75 4e-49 ethylene-responsive transcription factor 4-like
blastp_kegg lcl|gmx:100500601 1 188 + 188 Gaps:23 100.00 193 60.10 5e-49 ERF6 ethylene-responsive transcription factor 6
blastp_kegg lcl|cam:101501427 1 188 + 188 Gaps:23 100.00 201 61.19 5e-49 ethylene-responsive transcription factor 4-like
blastp_kegg lcl|sot:102580681 16 184 + 169 Gaps:43 86.73 226 52.55 4e-48 ethylene-responsive transcription factor 4-like
blastp_kegg lcl|gmx:100786709 1 188 + 188 Gaps:17 100.00 183 61.20 5e-48 ethylene-responsive transcription factor 4-like
blastp_kegg lcl|gmx:100813652 1 188 + 188 Gaps:25 100.00 193 61.66 1e-47 ethylene-responsive transcription factor 4-like
blastp_kegg lcl|crb:CARUB_v10010374mg 11 186 + 176 Gaps:34 98.95 190 52.66 3e-46 hypothetical protein
blastp_kegg lcl|brp:103869948 6 134 + 129 Gaps:17 68.60 207 62.68 8e-46 ethylene-responsive transcription factor 4
blastp_kegg lcl|pvu:PHAVU_011G162900g 1 188 + 188 Gaps:11 100.00 191 62.83 2e-45 hypothetical protein
blastp_pdb 3gcc_A 16 77 + 62 Gaps:1 90.00 70 65.08 9e-20 mol:protein length:70 ATERF1
blastp_pdb 2gcc_A 16 77 + 62 Gaps:1 90.00 70 65.08 9e-20 mol:protein length:70 ATERF1
blastp_pdb 1gcc_A 21 77 + 57 Gaps:1 92.06 63 68.97 1e-19 mol:protein length:63 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
blastp_uniprot_sprot sp|O80340|ERF78_ARATH 10 133 + 124 Gaps:27 67.12 222 57.72 9e-44 Ethylene-responsive transcription factor 4 OS Arabidopsis thaliana GN ERF4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LW49|ERF4_NICSY 17 186 + 170 Gaps:34 89.87 227 45.59 4e-38 Ethylene-responsive transcription factor 4 OS Nicotiana sylvestris GN ERF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q40477|ERF4_TOBAC 8 186 + 179 Gaps:33 93.33 225 45.24 5e-38 Ethylene-responsive transcription factor 4 OS Nicotiana tabacum GN ERF4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9C5I3|ERF76_ARATH 1 186 + 186 Gaps:27 99.40 166 56.36 6e-34 Ethylene-responsive transcription factor 11 OS Arabidopsis thaliana GN ERF11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FE67|ERF80_ARATH 17 84 + 68 none 34.00 200 83.82 1e-33 Ethylene-responsive transcription factor 9 OS Arabidopsis thaliana GN ERF9 PE 2 SV 1
blastp_uniprot_sprot sp|Q9MAI5|ERF79_ARATH 16 186 + 171 Gaps:33 86.49 185 56.88 6e-33 Ethylene-responsive transcription factor 8 OS Arabidopsis thaliana GN ERF8 PE 2 SV 1
blastp_uniprot_sprot sp|Q94ID6|ERF81_ARATH 16 79 + 64 none 33.86 189 82.81 3e-30 Ethylene-responsive transcription factor 12 OS Arabidopsis thaliana GN ERF12 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZWA2|ERF77_ARATH 16 77 + 62 none 25.31 245 80.65 2e-28 Ethylene-responsive transcription factor 10 OS Arabidopsis thaliana GN ERF10 PE 2 SV 1
blastp_uniprot_sprot sp|O80339|ERF82_ARATH 17 77 + 61 none 27.11 225 85.25 2e-28 Ethylene-responsive transcription factor 3 OS Arabidopsis thaliana GN ERF3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LDE4|ERF83_ARATH 17 77 + 61 none 25.00 244 81.97 2e-26 Ethylene-responsive transcription factor 7 OS Arabidopsis thaliana GN ERF7 PE 1 SV 1
rpsblast_cdd gnl|CDD|197689 20 83 + 64 none 100.00 64 67.19 7e-28 smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
rpsblast_cdd gnl|CDD|28902 20 77 + 58 none 95.08 61 68.97 1e-22 cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE) a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1 which is involved in stress response contain a single copy of the AP2 domain. APETALA2-like proteins which play a role in plant development contain two copies..
rpsblast_cdd gnl|CDD|201470 20 69 + 50 Gaps:4 98.11 53 61.54 1e-13 pfam00847 AP2 AP2 domain. This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 20 77 58 PS51032 none AP2/ERF domain profile. IPR001471
PRINTS 21 32 12 PR00367 none Ethylene responsive element binding protein signature IPR001471
PRINTS 43 59 17 PR00367 none Ethylene responsive element binding protein signature IPR001471
SUPERFAMILY 20 77 58 SSF54171 none none IPR016177
Gene3D 20 78 59 G3DSA:3.30.730.10 none none IPR001471
PANTHER 17 143 127 PTHR31677 none none none
SMART 20 83 64 SM00380 none DNA-binding domain in plant proteins such as APETALA2 and EREBPs IPR001471
Pfam 20 70 51 PF00847 none AP2 domain IPR001471

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL4_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,45 0 27,45 lod 4,5 10,6
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2003_QTL13_peak_Bud_burst_A4 Qrob_Chr09 9 s_1AP8MN_635 s_1A3QQ_692 18,18 10,88 25,88 lod 3,4 7,2
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5

0 Targeting