Protein : Qrob_P0013760.2 Q. robur
Protein Identifier  ? Qrob_P0013760.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) 4.1.2.8 - Indole-3-glycerol-phosphate lyase. Code Enzyme  EC:4.2.1.20, EC:4.1.2.8
Gene Prediction Quality  validated Protein length 

Sequence

Length: 107  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0008152 metabolic process The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0004834 tryptophan synthase activity Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.
GO:0006568 tryptophan metabolic process The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101204670 7 89 + 83 Gaps:8 46.47 170 64.56 1e-22 tryptophan synthase alpha chain-like
blastp_kegg lcl|csv:101208116 7 89 + 83 Gaps:8 46.47 170 64.56 1e-22 tryptophan synthase alpha chain-like
blastp_kegg lcl|vvi:100252844 18 89 + 72 Gaps:6 20.89 316 77.27 1e-22 indole-3-glycerol phosphate lyase chloroplastic-like
blastp_kegg lcl|cam:101507894 18 89 + 72 Gaps:6 21.02 314 75.76 1e-22 tryptophan synthase alpha chain chloroplastic-like
blastp_kegg lcl|pvu:PHAVU_001G156200g 18 89 + 72 Gaps:6 24.44 270 77.27 2e-22 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10021275mg 18 89 + 72 Gaps:6 21.22 311 75.76 2e-22 hypothetical protein
blastp_kegg lcl|cit:102608720 18 89 + 72 Gaps:6 21.22 311 75.76 2e-22 tryptophan synthase alpha chain chloroplastic-like
blastp_kegg lcl|tcc:TCM_004218 1 89 + 89 Gaps:6 26.60 312 62.65 2e-22 Aldolase-type TIM barrel family protein
blastp_kegg lcl|pxb:103945989 11 89 + 79 Gaps:8 23.89 314 70.67 2e-22 tryptophan synthase alpha chain-like
blastp_kegg lcl|pxb:103957327 18 89 + 72 Gaps:6 21.02 314 77.27 2e-22 tryptophan synthase alpha chain
blastp_pdb 1rd5_B 18 92 + 75 Gaps:7 26.72 262 54.29 5e-15 mol:protein length:262 Tryptophan synthase alpha chain chloroplast
blastp_pdb 1rd5_A 18 92 + 75 Gaps:7 26.72 262 54.29 5e-15 mol:protein length:262 Tryptophan synthase alpha chain chloroplast
blastp_pdb 1tjr_B 18 92 + 75 Gaps:7 26.82 261 54.29 6e-15 mol:protein length:261 BX1
blastp_pdb 1tjr_A 18 92 + 75 Gaps:7 26.82 261 54.29 6e-15 mol:protein length:261 BX1
blastp_uniprot_sprot sp|Q42529|TRPA2_ARATH 1 89 + 89 Gaps:10 26.60 312 60.24 8e-22 Tryptophan synthase alpha chain chloroplastic OS Arabidopsis thaliana GN TSA1 PE 1 SV 1
blastp_uniprot_sprot sp|O22765|TRPA1_ARATH 18 89 + 72 Gaps:6 24.00 275 71.21 3e-21 Tryptophan synthase alpha chain OS Arabidopsis thaliana GN TRPA1 PE 1 SV 2
blastp_uniprot_sprot sp|Q8DLN9|TRPA_THEEB 7 87 + 81 Gaps:6 28.20 266 52.00 4e-18 Tryptophan synthase alpha chain OS Thermosynechococcus elongatus (strain BP-1) GN trpA PE 3 SV 1
blastp_uniprot_sprot sp|Q3MBD2|TRPA_ANAVT 11 90 + 80 Gaps:6 27.82 266 54.05 6e-18 Tryptophan synthase alpha chain OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN trpA PE 3 SV 1
blastp_uniprot_sprot sp|P51382|TRPA_PORPU 4 98 + 95 Gaps:6 32.60 273 43.82 1e-16 Tryptophan synthase alpha chain OS Porphyra purpurea GN trpA PE 3 SV 1
blastp_uniprot_sprot sp|B0C6F8|TRPA_ACAM1 18 92 + 75 Gaps:7 26.22 267 54.29 5e-16 Tryptophan synthase alpha chain OS Acaryochloris marina (strain MBIC 11017) GN trpA PE 3 SV 1
blastp_uniprot_sprot sp|Q1XDA5|TRPA_PYRYE 4 89 + 86 Gaps:6 30.42 263 46.25 6e-16 Tryptophan synthase alpha chain OS Pyropia yezoensis GN trpA PE 3 SV 1
blastp_uniprot_sprot sp|Q10W95|TRPA_TRIEI 18 89 + 72 Gaps:6 24.91 265 56.06 7e-16 Tryptophan synthase alpha chain OS Trichodesmium erythraeum (strain IMS101) GN trpA PE 3 SV 1
blastp_uniprot_sprot sp|Q7NHC5|TRPA_GLOVI 13 88 + 76 Gaps:10 26.81 276 54.05 1e-15 Tryptophan synthase alpha chain OS Gloeobacter violaceus (strain PCC 7421) GN trpA PE 3 SV 1
blastp_uniprot_sprot sp|B7JUK2|TRPA_CYAP8 18 92 + 75 Gaps:7 26.22 267 52.86 1e-15 Tryptophan synthase alpha chain OS Cyanothece sp. (strain PCC 8801) GN trpA PE 3 SV 1
rpsblast_cdd gnl|CDD|178201 18 92 + 75 Gaps:7 28.00 250 60.00 2e-21 PLN02591 PLN02591 tryptophan synthase.
rpsblast_cdd gnl|CDD|133642 18 88 + 71 Gaps:6 24.71 263 52.31 3e-13 CHL00200 trpA tryptophan synthase alpha subunit Provisional.
rpsblast_cdd gnl|CDD|183865 18 87 + 70 Gaps:6 24.81 258 45.31 4e-11 PRK13111 trpA tryptophan synthase subunit alpha Provisional.
rpsblast_cdd gnl|CDD|73386 18 89 + 72 Gaps:6 27.27 242 46.97 5e-11 cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan..
rpsblast_cdd gnl|CDD|201134 18 89 + 72 Gaps:6 25.58 258 43.94 8e-11 pfam00290 Trp_syntA Tryptophan synthase alpha chain.
rpsblast_cdd gnl|CDD|30508 18 89 + 72 Gaps:6 24.91 265 43.94 1e-09 COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 14 89 76 G3DSA:3.20.20.70 none none IPR013785
PANTHER 34 89 56 PTHR10314:SF88 none none none
SUPERFAMILY 11 88 78 SSF51366 none none IPR011060
Pfam 16 89 74 PF00290 "KEGG:00260+4.2.1.20","KEGG:00400+4.2.1.20","UniPathway:UPA00035" Tryptophan synthase alpha chain IPR002028
PANTHER 34 89 56 PTHR10314 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting