Protein : Qrob_P0013730.2 Q. robur
Protein Identifier  ? Qrob_P0013730.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=11) PTHR10593:SF20 - INDETERMINATE-DOMAIN 12 PROTEIN (PTHR10593:SF20) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 511  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0002s04880g 1 510 + 510 Gaps:88 100.00 472 68.43 0.0 POPTRDRAFT_551125 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s23660g 1 510 + 510 Gaps:80 100.00 474 67.30 0.0 POPTRDRAFT_559606 zinc finger family protein
blastp_kegg lcl|tcc:TCM_004271 1 510 + 510 Gaps:98 100.00 438 69.86 0.0 Indeterminate(ID)-domain 12
blastp_kegg lcl|fve:101308040 1 510 + 510 Gaps:96 100.00 446 70.40 1e-179 zinc finger protein NUTCRACKER-like
blastp_kegg lcl|pxb:103960088 1 510 + 510 Gaps:105 100.00 465 68.82 3e-175 zinc finger protein MAGPIE-like
blastp_kegg lcl|rcu:RCOM_0990360 1 510 + 510 Gaps:70 100.00 466 67.60 9e-175 nucleic acid binding protein putative
blastp_kegg lcl|pper:PRUPE_ppa005468mg 1 510 + 510 Gaps:104 100.00 460 70.65 2e-173 hypothetical protein
blastp_kegg lcl|gmx:100812496 1 510 + 510 Gaps:90 99.78 463 65.15 3e-173 zinc finger protein NUTCRACKER-like
blastp_kegg lcl|cic:CICLE_v10019959mg 1 510 + 510 Gaps:101 100.00 477 65.83 3e-173 hypothetical protein
blastp_kegg lcl|cit:102619992 1 510 + 510 Gaps:101 100.00 477 65.83 3e-173 zinc finger protein NUTCRACKER-like
blastp_pdb 2i13_B 58 195 + 138 Gaps:22 63.16 190 30.00 7e-07 mol:protein length:190 Aart
blastp_pdb 2i13_A 58 195 + 138 Gaps:22 63.16 190 30.00 7e-07 mol:protein length:190 Aart
blastp_uniprot_sprot sp|Q9FFH3|NUC_ARATH 35 344 + 310 Gaps:57 68.88 466 59.81 1e-110 Zinc finger protein NUTCRACKER OS Arabidopsis thaliana GN NUC PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZWA6|MGP_ARATH 36 211 + 176 Gaps:3 34.19 506 87.28 1e-110 Zinc finger protein MAGPIE OS Arabidopsis thaliana GN MGP PE 1 SV 1
blastp_uniprot_sprot sp|Q700D2|JKD_ARATH 46 240 + 195 Gaps:5 38.17 503 76.56 2e-100 Zinc finger protein JACKDAW OS Arabidopsis thaliana GN JKD PE 1 SV 1
blastp_uniprot_sprot sp|Q9C8N5|STOP1_ARATH 55 198 + 144 Gaps:14 31.66 499 35.44 7e-21 Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS Arabidopsis thaliana GN STOP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q943I6|STOP1_ORYSJ 61 198 + 138 Gaps:12 28.74 522 35.33 1e-20 Zinc finger protein STOP1 homolog OS Oryza sativa subsp. japonica GN Os01g0871200 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QX40|ART1_ORYSJ 61 198 + 138 Gaps:15 32.90 465 35.29 2e-19 Zinc finger protein STAR3 OS Oryza sativa subsp. japonica GN STAR3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8VWG3|TT1_ARATH 59 228 + 170 Gaps:16 57.43 303 35.63 3e-18 Protein TRANSPARENT TESTA 1 OS Arabidopsis thaliana GN TT1 PE 2 SV 1
blastp_uniprot_sprot sp|O43313|ATMIN_HUMAN 52 195 + 144 Gaps:11 18.35 823 29.80 4e-10 ATM interactor OS Homo sapiens GN ATMIN PE 1 SV 2
blastp_uniprot_sprot sp|Q6P9S1|ATMIN_MOUSE 114 195 + 82 Gaps:2 9.78 818 33.75 6e-09 ATM interactor OS Mus musculus GN Atmin PE 2 SV 2
blastp_uniprot_sprot sp|Q6PGE4|ZF316_MOUSE 75 196 + 122 Gaps:22 10.24 1016 36.54 2e-07 Zinc finger protein 316 OS Mus musculus GN Znf316 PE 2 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 74 97 24 SSF57667 none none none
SUPERFAMILY 146 171 26 SSF57667 none none none
Gene3D 74 97 24 G3DSA:3.30.160.60 none none IPR013087
PANTHER 6 211 206 PTHR10593:SF20 none none IPR031140
ProSitePatterns 77 97 21 PS00028 none Zinc finger C2H2 type domain signature. IPR007087
ProSiteProfiles 75 97 23 PS50157 none Zinc finger C2H2 type domain profile. IPR007087
Gene3D 139 172 34 G3DSA:3.30.160.60 none none IPR013087
PANTHER 6 211 206 PTHR10593 none none none
SMART 116 146 31 SM00355 none zinc finger IPR015880
SMART 75 97 23 SM00355 none zinc finger IPR015880
SMART 151 171 21 SM00355 none zinc finger IPR015880

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting