Protein : Qrob_P0013350.2 Q. robur
Protein Identifier  ? Qrob_P0013350.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02961 - small subunit ribosomal protein S17 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 157  
Kegg Orthology  K02961
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|ath:AT1G79850 13 156 + 144 Gaps:6 93.96 149 67.86 3e-59 RPS17 30S ribosomal protein S17
blastp_kegg lcl|aly:ARALYDRAFT_477281 13 156 + 144 Gaps:6 94.59 148 67.14 3e-57 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa012825mg 1 154 + 154 Gaps:10 99.35 153 75.00 1e-56 hypothetical protein
blastp_kegg lcl|brp:103839491 13 154 + 142 Gaps:15 89.58 144 73.64 1e-56 30S ribosomal protein S17 chloroplastic-like
blastp_kegg lcl|pxb:103944857 1 154 + 154 Gaps:10 99.35 153 76.32 5e-56 30S ribosomal protein S17 chloroplastic-like
blastp_kegg lcl|fve:101315448 1 154 + 154 Gaps:6 99.34 151 74.67 1e-55 30S ribosomal protein S17 chloroplastic-like
blastp_kegg lcl|mdm:103405452 1 154 + 154 Gaps:10 99.35 153 76.32 3e-55 30S ribosomal protein S17 chloroplastic
blastp_kegg lcl|brp:103839492 13 154 + 142 Gaps:15 91.49 141 71.32 5e-55 30S ribosomal protein S17 chloroplastic-like
blastp_kegg lcl|pxb:103930445 1 154 + 154 Gaps:10 99.35 153 75.00 3e-54 30S ribosomal protein S17 chloroplastic-like
blastp_kegg lcl|pxb:103930430 1 154 + 154 Gaps:10 99.35 153 75.00 3e-54 30S ribosomal protein S17 chloroplastic-like
blastp_pdb 3bbn_Q 13 140 + 128 Gaps:5 86.62 142 69.11 3e-55 mol:protein length:142 Ribosomal Protein S17
blastp_pdb 1rip_A 63 137 + 75 none 92.59 81 44.00 6e-14 mol:protein length:81 RIBOSOMAL PROTEIN S17
blastp_pdb 3pyu_Q 59 126 + 68 none 68.69 99 48.53 6e-14 mol:protein length:99 30S ribosomal protein S17
blastp_pdb 3pys_Q 59 126 + 68 none 68.69 99 48.53 6e-14 mol:protein length:99 30S ribosomal protein S17
blastp_pdb 3pyq_Q 59 126 + 68 none 68.69 99 48.53 6e-14 mol:protein length:99 30S ribosomal protein S17
blastp_pdb 3pyn_Q 59 126 + 68 none 68.69 99 48.53 6e-14 mol:protein length:99 30S ribosomal protein S17
blastp_pdb 3ms0_Q 59 126 + 68 none 68.69 99 48.53 6e-14 mol:protein length:99 30S ribosomal protein S17
blastp_pdb 3mr8_Q 59 126 + 68 none 68.69 99 48.53 6e-14 mol:protein length:99 30S ribosomal protein S17
blastp_pdb 3fic_Q 59 126 + 68 none 68.00 100 48.53 7e-14 mol:protein length:100 30S ribosomal protein S17
blastp_pdb 1qd7_I 63 137 + 75 none 84.27 89 44.00 7e-14 mol:protein length:89 S17 RIBOSOMAL PROTEIN
blastp_uniprot_sprot sp|P16180|RR17_ARATH 13 156 + 144 Gaps:6 93.96 149 67.86 1e-60 30S ribosomal protein S17 chloroplastic OS Arabidopsis thaliana GN RPS17 PE 2 SV 1
blastp_uniprot_sprot sp|P17092|RR17_PEA 22 155 + 134 Gaps:3 97.76 134 63.36 9e-47 30S ribosomal protein S17 chloroplastic (Fragment) OS Pisum sativum GN RPS17 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZST1|RR17_ORYSJ 18 139 + 122 Gaps:6 80.00 145 58.62 8e-35 30S ribosomal protein S17 chloroplastic OS Oryza sativa subsp. japonica GN RPS17 PE 2 SV 1
blastp_uniprot_sprot sp|Q9TJN6|RR17_MAIZE 55 139 + 85 none 64.39 132 65.88 2e-32 30S ribosomal protein S17 chloroplastic OS Zea mays GN RPS17 PE 2 SV 1
blastp_uniprot_sprot sp|A9BH96|RS17_PETMO 59 142 + 84 none 76.36 110 44.05 3e-19 30S ribosomal protein S17 OS Petrotoga mobilis (strain DSM 10674 / SJ95) GN rpsQ PE 3 SV 1
blastp_uniprot_sprot sp|Q1RHN0|RS17_RICBR 61 129 + 69 none 89.61 77 53.62 2e-17 30S ribosomal protein S17 OS Rickettsia bellii (strain RML369-C) GN rpsQ PE 3 SV 1
blastp_uniprot_sprot sp|A8GVC3|RS17_RICB8 61 129 + 69 none 89.61 77 53.62 2e-17 30S ribosomal protein S17 OS Rickettsia bellii (strain OSU 85-389) GN rpsQ PE 3 SV 1
blastp_uniprot_sprot sp|C5CGQ5|RS17_KOSOT 59 136 + 78 none 77.23 101 48.72 2e-17 30S ribosomal protein S17 OS Kosmotoga olearia (strain TBF 19.5.1) GN rpsQ PE 3 SV 1
blastp_uniprot_sprot sp|P38519|RS17_THEMA 59 134 + 76 none 71.03 107 48.68 4e-17 30S ribosomal protein S17 OS Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN rpsQ PE 3 SV 2
blastp_uniprot_sprot sp|A5IM92|RS17_THEP1 59 134 + 76 none 71.03 107 48.68 5e-17 30S ribosomal protein S17 OS Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN rpsQ PE 3 SV 1

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 63 131 69 PF00366 none Ribosomal protein S17 IPR000266
TIGRFAM 59 127 69 TIGR03635 none uS17_bact: ribosomal protein uS17 IPR019984
Hamap 56 134 79 MF_01345_B none 30S ribosomal protein S17 [rpsQ]. IPR000266
PRINTS 119 126 8 PR00973 none Ribosomal protein S17 family signature IPR000266
PRINTS 77 100 24 PR00973 none Ribosomal protein S17 family signature IPR000266
PRINTS 109 119 11 PR00973 none Ribosomal protein S17 family signature IPR000266
ProDom 59 129 71 PD001295 none RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 IPR000266
ProSitePatterns 109 121 13 PS00056 none Ribosomal protein S17 signature. IPR019979
Gene3D 58 142 85 G3DSA:2.40.50.140 none none IPR012340
SUPERFAMILY 58 134 77 SSF50249 none none IPR012340
PANTHER 55 134 80 PTHR10744:SF7 none none none
PANTHER 55 134 80 PTHR10744 none none IPR000266

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting