Protein : Qrob_P0013220.2 Q. robur
Protein Identifier  ? Qrob_P0013220.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=84) PF02362 - B3 DNA binding domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 223  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pvu:PHAVU_007G019700g 9 219 + 211 Gaps:41 91.39 267 35.25 3e-35 hypothetical protein
blastp_kegg lcl|gmx:100793469 10 219 + 210 Gaps:59 74.10 363 32.34 6e-35 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|tcc:TCM_000517 10 221 + 212 Gaps:93 63.28 482 30.16 8e-35 AP2/B3-like transcriptional factor family protein putative
blastp_kegg lcl|tcc:TCM_000516 10 219 + 210 Gaps:94 53.26 567 30.13 1e-34 AP2/B3-like transcriptional factor family protein putative
blastp_kegg lcl|gmx:100793986 9 217 + 209 Gaps:36 85.26 285 34.98 3e-34 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|tcc:TCM_000518 9 219 + 211 Gaps:83 56.15 520 32.19 3e-34 AP2/B3-like transcriptional factor family protein putative
blastp_kegg lcl|mtr:MTR_140s0011 7 218 + 212 Gaps:47 92.83 279 33.98 3e-34 B3 domain-containing transcription factor VRN1
blastp_kegg lcl|mtr:MTR_3g061320 7 218 + 212 Gaps:47 92.83 279 33.98 3e-34 B3 domain-containing transcription factor VRN1
blastp_kegg lcl|gmx:102661781 9 221 + 213 Gaps:41 83.01 306 34.25 3e-33 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|gmx:102669906 1 217 + 217 Gaps:43 89.75 283 34.25 9e-33 B3 domain-containing transcription factor VRN1-like
blastp_uniprot_sprot sp|Q9ZSH7|Y4158_ARATH 7 131 + 125 Gaps:6 62.63 190 41.18 2e-22 B3 domain-containing protein At4g01580 OS Arabidopsis thaliana GN At4g01580 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L3W1|VRN1_ARATH 9 154 + 146 Gaps:10 45.75 341 35.26 2e-21 B3 domain-containing transcription factor VRN1 OS Arabidopsis thaliana GN VRN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XIB4|Y1475_ARATH 7 96 + 90 Gaps:1 46.84 190 43.82 3e-19 B3 domain-containing protein At1g49475 OS Arabidopsis thaliana GN At1g49475 PE 2 SV 2
blastp_uniprot_sprot sp|Q851V1|Y3160_ORYSJ 8 219 + 212 Gaps:55 85.29 306 27.20 7e-19 Putative B3 domain-containing protein Os03g0621600 OS Oryza sativa subsp. japonica GN Os03g0621600 PE 3 SV 1
blastp_uniprot_sprot sp|Q84R27|Y3896_ARATH 7 95 + 89 none 42.58 209 40.45 1e-17 B3 domain-containing protein At3g18960 OS Arabidopsis thaliana GN At3g18960 PE 2 SV 1
blastp_uniprot_sprot sp|Q851V5|Y3216_ORYSJ 10 217 + 208 Gaps:139 58.70 1029 25.33 3e-15 Putative B3 domain-containing protein Os03g0621600 OS Oryza sativa subsp. japonica GN Os03g0621600 PE 3 SV 1
blastp_uniprot_sprot sp|Q7XS75|Y4469_ORYSJ 9 92 + 84 Gaps:3 20.37 427 37.93 5e-12 Putative B3 domain-containing protein Os04g0346900 OS Oryza sativa subsp. japonica GN Os04g0346900 PE 3 SV 2
blastp_uniprot_sprot sp|Q7XS74|Y4474_ORYSJ 9 206 + 198 Gaps:56 58.53 434 22.05 1e-11 Putative B3 domain-containing protein Os04g0347400 OS Oryza sativa subsp. japonica GN Os04g0347400 PE 3 SV 3
blastp_uniprot_sprot sp|Q8GYM4|REM14_ARATH 5 213 + 209 Gaps:27 40.00 490 27.55 4e-11 B3 domain-containing protein REM14 OS Arabidopsis thaliana GN REM14 PE 2 SV 2
blastp_uniprot_sprot sp|Q10GP0|Y3198_ORYSJ 10 162 + 153 Gaps:3 59.29 253 30.00 6e-10 Putative B3 domain-containing protein Os03g0619850 OS Oryza sativa subsp. japonica GN Os03g0619850 PE 3 SV 1
rpsblast_cdd gnl|CDD|202217 9 86 + 78 Gaps:3 83.51 97 29.63 2e-10 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 9 85 + 77 Gaps:3 83.33 96 30.00 4e-10 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 9 219 + 211 Gaps:5 81.63 98 47.50 4e-10 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 9 85 77 PF02362 none B3 DNA binding domain IPR003340
Pfam 162 219 58 PF02362 none B3 DNA binding domain IPR003340
SUPERFAMILY 146 219 74 SSF101936 none none IPR015300
PANTHER 9 210 202 PTHR31674 none none none
Gene3D 172 219 48 G3DSA:2.40.330.10 none none IPR015300
Gene3D 8 86 79 G3DSA:2.40.330.10 none none IPR015300
SMART 2 86 85 SM01019 none B3 DNA binding domain IPR003340
SMART 98 221 124 SM01019 none B3 DNA binding domain IPR003340
ProSiteProfiles 1 86 86 PS50863 none B3 DNA-binding domain profile. IPR003340
ProSiteProfiles 154 221 68 PS50863 none B3 DNA-binding domain profile. IPR003340
SUPERFAMILY 7 85 79 SSF101936 none none IPR015300

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting