Protein : Qrob_P0011740.2 Q. robur
Protein Identifier  ? Qrob_P0011740.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR16079 - UBIQUITIN LIGASE PROTEIN CHFR Code Enzyme  EC:6.3.2.19
Gene Prediction Quality  validated Protein length 

Sequence

Length: 226  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pxb:103963207 1 195 + 195 Gaps:1 41.99 462 73.71 1e-93 E3 ubiquitin-protein ligase CHFR-like
blastp_kegg lcl|cam:101493435 1 195 + 195 Gaps:2 42.21 462 73.85 2e-93 E3 ubiquitin-protein ligase CHFR-like
blastp_kegg lcl|pmum:103320676 1 195 + 195 Gaps:1 41.99 462 72.68 4e-93 E3 ubiquitin-protein ligase CHFR
blastp_kegg lcl|cit:102631195 1 197 + 197 Gaps:1 42.52 461 70.41 7e-93 E3 ubiquitin-protein ligase CHFR-like
blastp_kegg lcl|pper:PRUPE_ppa005407mg 1 195 + 195 Gaps:1 41.99 462 72.16 8e-93 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s14500g 15 197 + 183 Gaps:2 38.92 465 74.59 3e-92 zinc finger family protein
blastp_kegg lcl|vvi:100266579 2 198 + 197 Gaps:2 42.64 462 69.04 2e-91 E3 ubiquitin-protein ligase CHFR-like
blastp_kegg lcl|tcc:TCM_003224 2 197 + 196 Gaps:1 40.62 480 68.72 1e-87 RING/U-box superfamily protein
blastp_kegg lcl|cic:CICLE_v10024761mg 4 197 + 194 Gaps:1 17.47 1105 70.47 2e-86 hypothetical protein
blastp_kegg lcl|mdm:103447656 3 195 + 193 Gaps:1 58.72 327 68.23 3e-86 uncharacterized LOC103447656
blastp_uniprot_sprot sp|Q810L3|CHFR_MOUSE 131 195 + 65 Gaps:6 8.89 664 45.76 2e-10 E3 ubiquitin-protein ligase CHFR OS Mus musculus GN Chfr PE 1 SV 1
blastp_uniprot_sprot sp|Q96EP1|CHFR_HUMAN 131 195 + 65 Gaps:6 8.89 664 45.76 3e-10 E3 ubiquitin-protein ligase CHFR OS Homo sapiens GN CHFR PE 1 SV 2
blastp_uniprot_sprot sp|Q5RF77|CHFR_PONAB 131 195 + 65 Gaps:6 10.33 571 45.76 3e-10 E3 ubiquitin-protein ligase CHFR OS Pongo abelii GN CHFR PE 2 SV 1
blastp_uniprot_sprot sp|Q6P256|CHFR_XENTR 131 195 + 65 Gaps:6 9.42 626 45.76 5e-10 E3 ubiquitin-protein ligase CHFR OS Xenopus tropicalis GN chfr PE 2 SV 1
blastp_uniprot_sprot sp|Q5FWP4|CHFR_XENLA 131 195 + 65 Gaps:6 9.44 625 45.76 6e-10 E3 ubiquitin-protein ligase CHFR OS Xenopus laevis GN chfr PE 1 SV 1
blastp_uniprot_sprot sp|A5WW08|CHFR_DANRE 131 195 + 65 Gaps:6 9.26 637 42.37 2e-09 E3 ubiquitin-protein ligase CHFR OS Danio rerio GN chfr PE 2 SV 1
blastp_uniprot_sprot sp|Q14258|TRI25_HUMAN 130 190 + 61 Gaps:6 9.05 630 50.88 4e-06 E3 ubiquitin/ISG15 ligase TRIM25 OS Homo sapiens GN TRIM25 PE 1 SV 2
rpsblast_kog gnl|CDD|35538 121 184 + 64 Gaps:7 19.45 293 35.09 1e-07 KOG0317 KOG0317 KOG0317 Predicted E3 ubiquitin ligase integral peroxisomal membrane protein [Posttranslational modification protein turnover chaperones].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 17 195 179 PTHR16079 none none none
Pfam 135 179 45 PF00097 none Zinc finger, C3HC4 type (RING finger) IPR018957
SMART 135 179 45 SM00184 none Ring finger IPR001841
SUPERFAMILY 130 186 57 SSF57850 none none none
ProSiteProfiles 135 180 46 PS50089 none Zinc finger RING-type profile. IPR001841
Gene3D 130 195 66 G3DSA:3.30.40.10 none none IPR013083
PANTHER 17 195 179 PTHR16079:SF2 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting