Protein : Qrob_P0011720.2 Q. robur
Protein Identifier  ? Qrob_P0011720.2 Organism . Name  Quercus robur
Protein Description  (M=9) PTHR10641//PTHR10641:SF495 - MYB-LIKE DNA-BINDING PROTEIN MYB // SUBFAMILY NOT NAMED Alias (in v1)  Qrob_P0050330.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 308  
Kegg Orthology  K09422
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0019s00750g 1 306 + 306 Gaps:30 100.00 318 63.84 2e-122 POPTRDRAFT_665234 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_009G158200g 1 305 + 305 Gaps:24 99.69 318 63.09 2e-122 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s14510g 1 306 + 306 Gaps:23 100.00 319 63.01 6e-121 hypothetical protein
blastp_kegg lcl|gmx:100808083 1 305 + 305 Gaps:35 99.67 303 67.88 4e-119 myb-related protein 308-like
blastp_kegg lcl|vvi:100261376 1 306 + 306 Gaps:34 100.00 290 64.83 4e-118 myb-related protein 330-like
blastp_kegg lcl|cit:102630891 1 303 + 303 Gaps:46 98.73 315 63.99 1e-114 myb-related protein 330-like
blastp_kegg lcl|cic:CICLE_v10026112mg 1 303 + 303 Gaps:47 98.73 316 63.46 1e-114 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1762610 1 288 + 288 Gaps:47 96.28 269 65.64 4e-103 r2r3-myb transcription factor putative
blastp_kegg lcl|gmx:778033 1 305 + 305 Gaps:46 99.67 300 63.55 9e-102 MYB56 MYB transcription factor MYB56
blastp_kegg lcl|tcc:TCM_036404 1 306 + 306 Gaps:62 100.00 306 60.13 2e-99 Myb domain protein 3 putative
blastp_pdb 1h8a_C 13 116 + 104 Gaps:1 80.47 128 49.51 7e-29 mol:protein length:128 MYB TRANSFORMING PROTEIN
blastp_pdb 1a5j_A 14 116 + 103 Gaps:1 92.73 110 50.98 8e-29 mol:protein length:110 B-MYB
blastp_pdb 1msf_C 14 116 + 103 Gaps:1 97.14 105 50.00 1e-27 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1mse_C 14 116 + 103 Gaps:1 97.14 105 50.00 1e-27 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1gv2_A 14 116 + 103 Gaps:1 97.14 105 50.00 2e-27 mol:protein length:105 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 1h89_C 14 116 + 103 Gaps:1 64.15 159 50.00 5e-27 mol:protein length:159 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 1h88_C 14 116 + 103 Gaps:1 64.15 159 50.00 5e-27 mol:protein length:159 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 3zqc_J 14 116 + 103 Gaps:5 77.86 131 44.12 4e-20 mol:protein length:131 MYB3
blastp_pdb 3zqc_G 14 116 + 103 Gaps:5 77.86 131 44.12 4e-20 mol:protein length:131 MYB3
blastp_pdb 3zqc_D 14 116 + 103 Gaps:5 77.86 131 44.12 4e-20 mol:protein length:131 MYB3
blastp_uniprot_sprot sp|P81393|MYB08_ANTMA 1 289 + 289 Gaps:58 99.57 232 67.97 3e-94 Myb-related protein 308 OS Antirrhinum majus GN MYB308 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZP1|MYB4_ARATH 1 286 + 286 Gaps:45 85.46 282 61.83 1e-89 Transcription repressor MYB4 OS Arabidopsis thaliana GN MYB4 PE 1 SV 1
blastp_uniprot_sprot sp|P81395|MYB30_ANTMA 1 300 + 300 Gaps:33 99.64 274 60.81 3e-89 Myb-related protein 330 OS Antirrhinum majus GN MYB330 PE 2 SV 1
blastp_uniprot_sprot sp|O49608|MYB32_ARATH 1 284 + 284 Gaps:55 83.58 274 62.01 2e-85 Transcription factor MYB32 OS Arabidopsis thaliana GN MYB32 PE 2 SV 1
blastp_uniprot_sprot sp|Q9S9K9|MYB3_ARATH 1 282 + 282 Gaps:54 95.72 257 57.32 8e-85 Transcription factor MYB3 OS Arabidopsis thaliana GN MYB3 PE 1 SV 1
blastp_uniprot_sprot sp|Q38851|MYB6_ARATH 1 134 + 134 none 56.78 236 85.07 8e-84 Transcription repressor MYB6 OS Arabidopsis thaliana GN MYB6 PE 1 SV 1
blastp_uniprot_sprot sp|P20026|MYB1_HORVU 1 152 + 152 none 56.93 267 77.63 3e-83 Myb-related protein Hv1 OS Hordeum vulgare GN MYB1 PE 2 SV 1
blastp_uniprot_sprot sp|P20025|MYB38_MAIZE 1 137 + 137 none 53.73 255 82.48 1e-82 Myb-related protein Zm38 OS Zea mays PE 2 SV 1
blastp_uniprot_sprot sp|Q38850|MYB5_ARATH 4 131 + 128 none 51.41 249 67.97 2e-61 Transcription repressor MYB5 OS Arabidopsis thaliana GN MYB5 PE 1 SV 1
blastp_uniprot_sprot sp|O64399|MYB34_ARATH 1 132 + 132 none 44.75 295 65.15 7e-61 Transcription factor MYB34 OS Arabidopsis thaliana GN MYB34 PE 1 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 13 108 96 SSF46689 none none IPR009057
PANTHER 1 134 134 PTHR10641:SF495 none none none
PANTHER 179 305 127 PTHR10641:SF495 none none none
Gene3D 65 116 52 G3DSA:1.10.10.60 none none IPR009057
ProSiteProfiles 9 61 53 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
Pfam 14 61 48 PF00249 none Myb-like DNA-binding domain IPR001005
Pfam 67 111 45 PF00249 none Myb-like DNA-binding domain IPR001005
PANTHER 179 305 127 PTHR10641 none none none
PANTHER 1 134 134 PTHR10641 none none none
SMART 13 63 51 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
SMART 66 114 49 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
ProSiteProfiles 62 116 55 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
Gene3D 5 64 60 G3DSA:1.10.10.60 none none IPR009057

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting