Protein : Qrob_P0011490.2 Q. robur
Protein Identifier  ? Qrob_P0011490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) PTHR13068:SF6 - gb def: agcp9491 [anopheles gambiae str. pest] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 278  
Kegg Orthology  K15032
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103335539 31 277 + 247 none 89.82 275 68.42 1e-117 uncharacterized LOC103335539
blastp_kegg lcl|pper:PRUPE_ppa021045mg 31 277 + 247 none 89.82 275 67.61 2e-116 hypothetical protein
blastp_kegg lcl|vvi:100853221 1 277 + 277 Gaps:1 100.00 276 62.68 1e-115 uncharacterized LOC100853221
blastp_kegg lcl|fve:101302903 29 277 + 249 none 96.14 259 66.27 3e-115 uncharacterized protein LOC101302903
blastp_kegg lcl|mdm:103420736 19 277 + 259 Gaps:1 91.81 281 66.67 3e-114 uncharacterized LOC103420736
blastp_kegg lcl|rcu:RCOM_0938160 1 277 + 277 Gaps:1 100.00 276 59.78 5e-113 hypothetical protein
blastp_kegg lcl|gmx:100812333 1 277 + 277 Gaps:3 100.00 274 59.12 3e-112 uncharacterized LOC100812333
blastp_kegg lcl|tcc:TCM_007280 24 277 + 254 Gaps:1 95.83 264 63.24 2e-111 Mitochondrial transcription termination factor family protein
blastp_kegg lcl|cmo:103495186 29 277 + 249 Gaps:3 87.23 282 63.01 4e-108 uncharacterized LOC103495186
blastp_kegg lcl|csv:101203623 29 277 + 249 Gaps:3 79.87 308 62.20 2e-107 uncharacterized LOC101203623
rpsblast_cdd gnl|CDD|202273 41 272 + 232 Gaps:12 68.41 345 28.81 6e-26 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_cdd gnl|CDD|178738 174 272 + 99 Gaps:1 20.12 487 31.63 7e-15 PLN03196 PLN03196 MOC1-like protein Provisional.
rpsblast_kog gnl|CDD|36481 39 277 + 239 Gaps:53 71.91 413 34.34 1e-15 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 44 273 230 PF02536 none mTERF IPR003690
PANTHER 38 276 239 PTHR13068 none none none
PANTHER 38 276 239 PTHR13068:SF6 none none none
SMART 49 82 34 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 194 226 33 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 87 120 34 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 227 258 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 125 156 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 161 189 29 SM00733 none Mitochondrial termination factor repeats IPR003690

1 Localization

Analysis Start End Length
SignalP_GRAM_POSITIVE 1 13 12

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting