Protein : Qrob_P0011320.2 Q. robur
Protein Identifier  ? Qrob_P0011320.2 Organism . Name  Quercus robur
Score  8.0 Score Type  egn
Protein Description  (M=5) 1.17.1.2 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. Code Enzyme  EC:1.17.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 415  
Kegg Orthology  K03527
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
GO:0050992 dimethylallyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of dimethylallyl diphosphate.
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + NAD(P)H + H+ = isopentenyl diphosphate + NAD(P)+ + H2O. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative name for 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101303948 11 413 + 403 Gaps:31 91.54 461 81.28 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|pop:POPTR_0009s11480g 7 413 + 407 Gaps:35 91.74 460 82.23 0.0 POPTRDRAFT_557296 chloroplast biogenesis family protein
blastp_kegg lcl|pmum:103335515 11 413 + 403 Gaps:31 91.54 461 80.09 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic
blastp_kegg lcl|rcu:RCOM_0938310 18 413 + 396 Gaps:31 89.06 466 81.20 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase putative (EC:1.17.1.2)
blastp_kegg lcl|mdm:103420733 12 413 + 402 Gaps:31 91.52 460 80.29 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|gmx:100818067 4 413 + 410 Gaps:33 92.42 462 79.39 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|pxb:103964132 12 413 + 402 Gaps:31 91.52 460 79.81 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic
blastp_kegg lcl|cmo:103495189 25 413 + 389 Gaps:31 88.12 463 82.84 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|mdm:103425754 12 413 + 402 Gaps:31 91.52 460 79.33 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic
blastp_kegg lcl|vvi:100267479 18 413 + 396 Gaps:31 89.25 465 80.00 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like
blastp_pdb 3dnf_B 63 405 + 343 Gaps:89 90.91 297 33.33 4e-18 mol:protein length:297 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3dnf_A 63 405 + 343 Gaps:89 90.91 297 33.33 4e-18 mol:protein length:297 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szo_B 63 413 + 351 Gaps:68 86.28 328 30.74 1e-12 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szo_A 63 413 + 351 Gaps:68 86.28 328 30.74 1e-12 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szl_B 63 413 + 351 Gaps:68 86.28 328 30.74 1e-12 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szl_A 63 413 + 351 Gaps:68 86.28 328 30.74 1e-12 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3f7t_B 63 413 + 351 Gaps:68 86.28 328 30.74 1e-12 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3f7t_A 63 413 + 351 Gaps:68 86.28 328 30.74 1e-12 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3kem_B 63 413 + 351 Gaps:68 86.81 326 30.74 1e-12 mol:protein length:326 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3kem_A 63 413 + 351 Gaps:68 86.81 326 30.74 1e-12 mol:protein length:326 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_uniprot_sprot sp|Q94B35|ISPH_ARATH 12 413 + 402 Gaps:31 90.34 466 76.72 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic OS Arabidopsis thaliana GN ISPH PE 2 SV 1
blastp_uniprot_sprot sp|Q6AVG6|ISPH_ORYSJ 25 412 + 388 Gaps:31 88.67 459 75.68 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic OS Oryza sativa subsp. japonica GN ISPH PE 2 SV 1
blastp_uniprot_sprot sp|B8HWD3|ISPH_CYAP4 24 406 + 383 Gaps:38 98.02 405 60.20 1e-169 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q5N249|ISPH_SYNP6 24 407 + 384 Gaps:37 99.75 398 58.94 5e-167 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q31S64|ISPH_SYNE7 24 407 + 384 Gaps:37 99.75 398 58.94 5e-167 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Synechococcus elongatus (strain PCC 7942) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q3M8X6|ISPH_ANAVT 24 411 + 388 Gaps:37 99.75 402 59.85 9e-167 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|P58674|ISPH_NOSS1 24 411 + 388 Gaps:37 99.75 402 59.85 2e-166 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B0C4N8|ISPH_ACAM1 24 410 + 387 Gaps:34 98.55 415 56.48 2e-162 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Acaryochloris marina (strain MBIC 11017) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B2IZV5|ISPH_NOSP7 24 411 + 388 Gaps:37 99.75 402 58.10 1e-160 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B0JVA7|ISPH_MICAN 24 406 + 383 Gaps:37 98.51 402 59.09 5e-160 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Microcystis aeruginosa (strain NIES-843) GN ispH PE 3 SV 1

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 60 400 341 PF02401 "KEGG:00900+1.17.1.2","MetaCyc:PWY-7560","UniPathway:UPA00056","UniPathway:UPA00059" LytB protein IPR003451
PANTHER 11 414 404 PTHR31619 none none none
TIGRFAM 61 399 339 TIGR00216 "KEGG:00900+1.17.1.2","MetaCyc:PWY-7560","UniPathway:UPA00056","UniPathway:UPA00059" ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IPR003451
PANTHER 11 414 404 PTHR31619:SF2 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting