Protein : Qrob_P0011270.2 Q. robur
Protein Identifier  ? Qrob_P0011270.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=5) 1.17.1.2 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. Code Enzyme  EC:1.17.1.2
Gene Prediction Quality  validated Protein length 

Sequence

Length: 395  
Kegg Orthology  K03527
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0046872 metal ion binding Interacting selectively and non-covalently with any metal ion.
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
GO:0050992 dimethylallyl diphosphate biosynthetic process The chemical reactions and pathways resulting in the formation of dimethylallyl diphosphate.
GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + NAD(P)H + H+ = isopentenyl diphosphate + NAD(P)+ + H2O. Note that (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate is an alternative name for 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s11480g 7 393 + 387 Gaps:13 81.30 460 90.11 0.0 POPTRDRAFT_557296 chloroplast biogenesis family protein
blastp_kegg lcl|cmo:103495189 7 393 + 387 Gaps:13 80.78 463 90.37 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0938310 7 393 + 387 Gaps:13 80.26 466 89.57 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase putative (EC:1.17.1.2)
blastp_kegg lcl|csv:101212295 7 393 + 387 Gaps:13 80.78 463 89.57 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|mdm:103420733 7 394 + 388 Gaps:13 81.52 460 87.73 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|pmum:103335515 7 393 + 387 Gaps:13 81.13 461 87.43 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic
blastp_kegg lcl|gmx:100818067 7 394 + 388 Gaps:13 81.17 462 88.00 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|fve:101303948 7 394 + 388 Gaps:13 81.34 461 87.20 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_kegg lcl|pxb:103964132 7 394 + 388 Gaps:13 81.52 460 87.47 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic
blastp_kegg lcl|pxb:103962553 7 393 + 387 Gaps:13 97.91 382 86.90 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic-like
blastp_pdb 3dnf_B 26 385 + 360 Gaps:88 94.28 297 35.71 7e-23 mol:protein length:297 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3dnf_A 26 385 + 360 Gaps:88 94.28 297 35.71 7e-23 mol:protein length:297 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szo_B 24 393 + 370 Gaps:75 89.94 328 32.88 3e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szo_A 24 393 + 370 Gaps:75 89.94 328 32.88 3e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szl_B 24 393 + 370 Gaps:75 89.94 328 32.88 3e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szl_A 24 393 + 370 Gaps:75 89.94 328 32.88 3e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3f7t_B 24 393 + 370 Gaps:75 89.94 328 32.88 3e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3f7t_A 24 393 + 370 Gaps:75 89.94 328 32.88 3e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szu_B 24 393 + 370 Gaps:75 89.94 328 32.54 7e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_pdb 3szu_A 24 393 + 370 Gaps:75 89.94 328 32.54 7e-18 mol:protein length:328 4-hydroxy-3-methylbut-2-enyl diphosphate redu
blastp_uniprot_sprot sp|Q94B35|ISPH_ARATH 7 393 + 387 Gaps:13 80.26 466 82.35 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic OS Arabidopsis thaliana GN ISPH PE 2 SV 1
blastp_uniprot_sprot sp|Q6AVG6|ISPH_ORYSJ 7 392 + 386 Gaps:13 81.26 459 82.31 0.0 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chloroplastic OS Oryza sativa subsp. japonica GN ISPH PE 2 SV 1
blastp_uniprot_sprot sp|Q5N249|ISPH_SYNP6 9 387 + 379 Gaps:19 90.45 398 65.00 1e-174 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q31S64|ISPH_SYNE7 9 387 + 379 Gaps:19 90.45 398 65.00 1e-174 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Synechococcus elongatus (strain PCC 7942) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B8HWD3|ISPH_CYAP4 10 386 + 377 Gaps:20 88.64 405 66.85 1e-174 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q3M8X6|ISPH_ANAVT 10 391 + 382 Gaps:19 90.30 402 64.46 2e-168 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|P58674|ISPH_NOSS1 10 391 + 382 Gaps:19 90.30 402 64.46 3e-168 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Nostoc sp. (strain PCC 7120 / UTEX 2576) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B0C4N8|ISPH_ACAM1 10 390 + 381 Gaps:16 89.40 415 61.99 3e-166 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Acaryochloris marina (strain MBIC 11017) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|B2IZV5|ISPH_NOSP7 8 391 + 384 Gaps:19 90.80 402 63.01 4e-164 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN ispH PE 3 SV 1
blastp_uniprot_sprot sp|Q8DK29|ISPH_THEEB 10 386 + 377 Gaps:19 89.05 402 65.08 8e-164 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS Thermosynechococcus elongatus (strain BP-1) GN ispH PE 3 SV 1

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 9 394 386 PTHR31619:SF2 none none none
TIGRFAM 28 379 352 TIGR00216 "KEGG:00900+1.17.1.2","MetaCyc:PWY-7560","UniPathway:UPA00056","UniPathway:UPA00059" ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IPR003451
Pfam 28 380 353 PF02401 "KEGG:00900+1.17.1.2","MetaCyc:PWY-7560","UniPathway:UPA00056","UniPathway:UPA00059" LytB protein IPR003451
PANTHER 9 394 386 PTHR31619 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting