Protein : Qrob_P0010510.2 Q. robur
Protein Identifier  ? Qrob_P0010510.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=10) PTHR31920:SF15 - B3 DOMAIN-CONTAINING PROTEIN REM20-RELATED (PTHR31920:SF15) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 205  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cmo:103484736 16 170 + 155 Gaps:3 49.84 305 38.16 8e-26 putative B3 domain-containing protein At5g66980
blastp_kegg lcl|csv:101221927 16 170 + 155 Gaps:11 51.78 309 35.00 5e-24 putative B3 domain-containing protein At5g66980-like
blastp_kegg lcl|cic:CICLE_v10028843mg 16 113 + 98 none 30.53 321 51.02 2e-23 hypothetical protein
blastp_kegg lcl|cit:102621201 16 113 + 98 none 30.53 321 51.02 2e-23 B3 domain-containing protein At5g60142-like
blastp_kegg lcl|csv:101225561 16 170 + 155 Gaps:11 51.78 309 34.38 5e-23 putative B3 domain-containing protein At5g66980-like
blastp_kegg lcl|sly:101244128 16 151 + 136 Gaps:11 64.06 217 38.13 2e-21 B3 domain-containing protein At5g60130-like
blastp_kegg lcl|sly:101250170 16 151 + 136 Gaps:11 41.37 336 38.13 4e-21 B3 domain-containing protein At5g60130-like
blastp_kegg lcl|sot:102599396 16 152 + 137 Gaps:20 41.43 350 35.86 2e-20 B3 domain-containing protein At5g60140-like
blastp_kegg lcl|cmo:103484737 16 109 + 94 none 9.95 945 43.62 3e-20 uncharacterized LOC103484737
blastp_kegg lcl|sly:101267170 16 154 + 139 Gaps:5 40.96 332 30.88 5e-19 putative B3 domain-containing protein At5g66980-like
blastp_pdb 1yel_A 14 109 + 96 none 92.31 104 31.25 3e-08 mol:protein length:104 At1g16640
blastp_uniprot_sprot sp|Q9FGD2|Y5698_ARATH 15 135 + 121 Gaps:8 36.83 334 40.65 4e-19 Putative B3 domain-containing protein At5g66980 OS Arabidopsis thaliana GN At5g66980 PE 3 SV 1
blastp_uniprot_sprot sp|Q1PES7|Y3622_ARATH 15 155 + 141 Gaps:17 83.91 174 32.19 2e-16 B3 domain-containing protein At3g06220 OS Arabidopsis thaliana GN At3g06220 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M8K2|REM21_ARATH 5 111 + 107 Gaps:13 36.36 330 33.33 5e-16 B3 domain-containing protein REM21 OS Arabidopsis thaliana GN REM21 PE 2 SV 1
blastp_uniprot_sprot sp|Q8LAV5|REM20_ARATH 15 99 + 85 none 29.72 286 42.35 3e-15 B3 domain-containing protein REM20 OS Arabidopsis thaliana GN REM20 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SZ05|Y3440_ARATH 1 111 + 111 Gaps:1 28.21 397 34.82 2e-14 B3 domain-containing protein At4g34400 OS Arabidopsis thaliana GN At4g34400 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LST3|Y5142_ARATH 15 120 + 106 Gaps:3 31.50 346 33.94 2e-13 B3 domain-containing protein At5g60142 OS Arabidopsis thaliana GN At5g60142 PE 2 SV 3
blastp_uniprot_sprot sp|Q2R9D2|Y1176_ORYSJ 16 111 + 96 Gaps:4 23.65 406 39.58 2e-12 B3 domain-containing protein Os11g0197600 OS Oryza sativa subsp. japonica GN Os11g0197600 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XS75|Y4469_ORYSJ 7 192 + 186 Gaps:14 44.03 427 28.72 6e-11 Putative B3 domain-containing protein Os04g0346900 OS Oryza sativa subsp. japonica GN Os04g0346900 PE 3 SV 2
blastp_uniprot_sprot sp|Q851V5|Y3216_ORYSJ 14 202 + 189 Gaps:44 50.05 1029 27.57 1e-10 Putative B3 domain-containing protein Os03g0621600 OS Oryza sativa subsp. japonica GN Os03g0621600 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LVG1|Y5013_ARATH 15 159 + 145 Gaps:16 49.39 326 27.33 2e-10 B3 domain-containing protein At5g60130 OS Arabidopsis thaliana GN At5g60130 PE 2 SV 1
rpsblast_cdd gnl|CDD|197383 15 97 + 83 Gaps:5 89.80 98 36.36 9e-12 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.
rpsblast_cdd gnl|CDD|202217 16 107 + 92 Gaps:5 100.00 97 34.02 2e-11 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 16 106 + 91 Gaps:7 100.00 96 34.38 2e-09 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 16 99 84 PF02362 none B3 DNA binding domain IPR003340
Gene3D 11 109 99 G3DSA:2.40.330.10 none none IPR015300
PANTHER 15 153 139 PTHR31920:SF15 none none none
SMART 16 107 92 SM01019 none B3 DNA binding domain IPR003340
Coils 126 169 44 Coil none none none
SUPERFAMILY 14 109 96 SSF101936 none none IPR015300
ProSiteProfiles 14 107 94 PS50863 none B3 DNA-binding domain profile. IPR003340
PANTHER 15 153 139 PTHR31920 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 24   Mitochondrion 3 0.071 0.779 NON-PLANT 24