Protein : Qrob_P0010500.2 Q. robur
Protein Identifier  ? Qrob_P0010500.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=84) PF02362 - B3 DNA binding domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 393  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264028 22 388 + 367 Gaps:49 94.84 407 38.34 8e-58 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|pop:POPTR_0010s19890g 43 388 + 346 Gaps:63 97.65 341 39.04 5e-50 POPTRDRAFT_770235 hypothetical protein
blastp_kegg lcl|cit:102625454 32 386 + 355 Gaps:45 95.65 345 39.09 8e-49 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|tcc:TCM_006968 25 391 + 367 Gaps:55 96.63 416 31.59 2e-48 Sulfotransferase putative isoform 1
blastp_kegg lcl|rcu:RCOM_0939220 25 389 + 365 Gaps:54 56.68 591 36.42 1e-47 sulfotransferase putative
blastp_kegg lcl|cit:102625732 32 388 + 357 Gaps:41 91.18 397 34.25 3e-47 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|pop:POPTR_0004s15410g 25 388 + 364 Gaps:77 93.24 340 38.49 1e-46 hypothetical protein
blastp_kegg lcl|cmo:103498420 32 391 + 360 Gaps:49 88.59 412 35.34 1e-46 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|csv:101221963 32 391 + 360 Gaps:49 88.59 412 34.79 2e-46 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|csv:101213446 32 391 + 360 Gaps:52 88.67 415 34.24 3e-45 B3 domain-containing transcription factor VRN1-like
blastp_uniprot_sprot sp|Q8L3W1|VRN1_ARATH 32 389 + 358 Gaps:39 97.07 341 34.44 9e-43 B3 domain-containing transcription factor VRN1 OS Arabidopsis thaliana GN VRN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8S2E6|Y1235_ORYSJ 32 388 + 357 Gaps:71 90.05 402 26.80 8e-20 B3 domain-containing protein Os01g0723500 OS Oryza sativa subsp. japonica GN Os01g0723500 PE 3 SV 1
blastp_uniprot_sprot sp|Q2R9D2|Y1176_ORYSJ 31 387 + 357 Gaps:32 89.41 406 25.90 8e-19 B3 domain-containing protein Os11g0197600 OS Oryza sativa subsp. japonica GN Os11g0197600 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIB5|REM19_ARATH 229 389 + 161 Gaps:20 75.66 226 38.60 3e-18 B3 domain-containing protein REM19 OS Arabidopsis thaliana GN REM19 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ZSH7|Y4158_ARATH 7 132 + 126 Gaps:12 68.42 190 35.38 4e-18 B3 domain-containing protein At4g01580 OS Arabidopsis thaliana GN At4g01580 PE 2 SV 1
blastp_uniprot_sprot sp|Q84R27|Y3896_ARATH 27 132 + 106 Gaps:9 54.07 209 35.40 9e-17 B3 domain-containing protein At3g18960 OS Arabidopsis thaliana GN At3g18960 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIB4|Y1475_ARATH 19 152 + 134 Gaps:11 71.05 190 35.56 3e-16 B3 domain-containing protein At1g49475 OS Arabidopsis thaliana GN At1g49475 PE 2 SV 2
blastp_uniprot_sprot sp|Q851W5|Y3204_ORYSJ 42 371 + 330 Gaps:61 56.07 519 28.18 9e-14 B3 domain-containing protein Os03g0620400 OS Oryza sativa subsp. japonica GN Os03g0620400 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XS75|Y4469_ORYSJ 26 114 + 89 Gaps:6 21.78 427 35.48 1e-11 Putative B3 domain-containing protein Os04g0346900 OS Oryza sativa subsp. japonica GN Os04g0346900 PE 3 SV 2
blastp_uniprot_sprot sp|Q0JP99|Y1341_ORYSJ 273 384 + 112 Gaps:10 21.82 495 37.04 2e-10 B3 domain-containing protein Os01g0234100 OS Oryza sativa subsp. japonica GN Os01g0234100 PE 2 SV 1
rpsblast_cdd gnl|CDD|197383 32 384 + 353 Gaps:15 98.98 98 49.48 1e-15 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.
rpsblast_cdd gnl|CDD|198087 32 382 + 351 Gaps:12 97.92 96 42.55 5e-12 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|202217 32 384 + 353 Gaps:14 96.91 97 40.43 9e-12 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 36 116 81 PF02362 none B3 DNA binding domain IPR003340
Pfam 291 385 95 PF02362 none B3 DNA binding domain IPR003340
PANTHER 272 384 113 PTHR31391 none none none
ProSiteProfiles 27 120 94 PS50863 none B3 DNA-binding domain profile. IPR003340
SUPERFAMILY 285 385 101 SSF101936 none none IPR015300
SUPERFAMILY 29 115 87 SSF101936 none none IPR015300
Gene3D 28 116 89 G3DSA:2.40.330.10 none none IPR015300
Gene3D 284 385 102 G3DSA:2.40.330.10 none none IPR015300
SMART 291 387 97 SM01019 none B3 DNA binding domain IPR003340
SMART 32 120 89 SM01019 none B3 DNA binding domain IPR003340
ProSiteProfiles 291 387 97 PS50863 none B3 DNA-binding domain profile. IPR003340

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting