Protein : Qrob_P0010490.2 Q. robur
Protein Identifier  ? Qrob_P0010490.2 Organism . Name  Quercus robur
Score  88.0 Score Type  egn
Protein Description  (M=84) PF02362 - B3 DNA binding domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 446  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

24 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100264028 38 439 + 402 Gaps:63 93.12 407 50.66 3e-107 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|csv:101221734 14 438 + 425 Gaps:49 96.88 417 46.53 2e-100 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|csv:101213202 14 438 + 425 Gaps:49 96.88 417 46.53 2e-100 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|cmo:103498421 26 438 + 413 Gaps:45 94.96 417 47.22 3e-99 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|tcc:TCM_006968 35 441 + 407 Gaps:72 96.88 416 44.91 9e-96 Sulfotransferase putative isoform 1
blastp_kegg lcl|pxb:103937291 42 445 + 404 Gaps:56 96.37 413 43.47 4e-90 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|mdm:103416337 42 445 + 404 Gaps:56 96.37 413 43.72 5e-90 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|pxb:103934397 42 445 + 404 Gaps:58 96.37 413 43.47 2e-89 B3 domain-containing transcription factor VRN1
blastp_kegg lcl|mdm:103425803 38 445 + 408 Gaps:57 96.64 417 42.93 5e-89 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|cic:CICLE_v10028501mg 15 441 + 427 Gaps:58 95.54 426 42.75 6e-87 hypothetical protein
blastp_pdb 1yel_A 54 136 + 83 none 79.81 104 31.33 2e-06 mol:protein length:104 At1g16640
blastp_uniprot_sprot sp|Q8L3W1|VRN1_ARATH 41 437 + 397 Gaps:74 98.24 341 41.79 2e-45 B3 domain-containing transcription factor VRN1 OS Arabidopsis thaliana GN VRN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XIB5|REM19_ARATH 313 437 + 125 Gaps:4 54.42 226 48.78 3e-30 B3 domain-containing protein REM19 OS Arabidopsis thaliana GN REM19 PE 1 SV 1
blastp_uniprot_sprot sp|Q8S2E6|Y1235_ORYSJ 42 442 + 401 Gaps:100 91.29 402 30.25 1e-26 B3 domain-containing protein Os01g0723500 OS Oryza sativa subsp. japonica GN Os01g0723500 PE 3 SV 1
blastp_uniprot_sprot sp|Q84R27|Y3896_ARATH 16 138 + 123 none 58.85 209 38.21 5e-25 B3 domain-containing protein At3g18960 OS Arabidopsis thaliana GN At3g18960 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZSH7|Y4158_ARATH 16 142 + 127 Gaps:1 66.32 190 38.10 1e-23 B3 domain-containing protein At4g01580 OS Arabidopsis thaliana GN At4g01580 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIB4|Y1475_ARATH 33 137 + 105 Gaps:1 54.74 190 35.58 4e-16 B3 domain-containing protein At1g49475 OS Arabidopsis thaliana GN At1g49475 PE 2 SV 2
blastp_uniprot_sprot sp|Q851V5|Y3216_ORYSJ 26 433 + 408 Gaps:62 51.21 1029 29.60 1e-12 Putative B3 domain-containing protein Os03g0621600 OS Oryza sativa subsp. japonica GN Os03g0621600 PE 3 SV 1
blastp_uniprot_sprot sp|Q2R9D2|Y1176_ORYSJ 42 441 + 400 Gaps:9 52.22 406 32.55 7e-12 B3 domain-containing protein Os11g0197600 OS Oryza sativa subsp. japonica GN Os11g0197600 PE 2 SV 1
blastp_uniprot_sprot sp|Q7XS75|Y4469_ORYSJ 55 132 + 78 Gaps:3 18.97 427 43.21 4e-11 Putative B3 domain-containing protein Os04g0346900 OS Oryza sativa subsp. japonica GN Os04g0346900 PE 3 SV 2
blastp_uniprot_sprot sp|Q2QMT6|Y1208_ORYSJ 56 137 + 82 none 16.73 490 32.93 3e-10 B3 domain-containing protein LOC_Os12g40080 OS Oryza sativa subsp. japonica GN Os12g0591400 PE 3 SV 1
rpsblast_cdd gnl|CDD|197383 41 434 + 394 Gaps:16 100.00 98 54.08 1e-15 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.
rpsblast_cdd gnl|CDD|202217 53 435 + 383 Gaps:11 95.88 97 48.39 1e-12 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 49 428 + 380 Gaps:8 98.96 96 41.05 2e-11 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 333 434 102 SSF101936 none none IPR015300
ProSiteProfiles 41 134 94 PS50863 none B3 DNA-binding domain profile. IPR003340
Pfam 45 126 82 PF02362 none B3 DNA binding domain IPR003340
Pfam 343 431 89 PF02362 none B3 DNA binding domain IPR003340
Gene3D 334 434 101 G3DSA:2.40.330.10 none none IPR015300
Gene3D 40 135 96 G3DSA:2.40.330.10 none none IPR015300
PANTHER 314 437 124 PTHR31391 none none none
PANTHER 314 437 124 PTHR31391:SF2 none none none
SMART 339 436 98 SM01019 none B3 DNA binding domain IPR003340
SMART 42 134 93 SM01019 none B3 DNA binding domain IPR003340
ProSiteProfiles 340 434 95 PS50863 none B3 DNA-binding domain profile. IPR003340
SUPERFAMILY 38 136 99 SSF101936 none none IPR015300

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting