Protein : Qrob_P0010480.2 Q. robur
Protein Identifier  ? Qrob_P0010480.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=10) PTHR31920:SF15 - B3 DOMAIN-CONTAINING PROTEIN REM20-RELATED (PTHR31920:SF15) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 392  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103425803 2 391 + 390 Gaps:9 93.29 417 70.95 0.0 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|pmum:103335459 2 391 + 390 Gaps:7 92.62 420 70.69 0.0 B3 domain-containing transcription factor VRN1
blastp_kegg lcl|mdm:103416337 2 384 + 383 Gaps:10 92.25 413 69.03 0.0 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|pxb:103934397 2 384 + 383 Gaps:8 92.25 413 68.24 0.0 B3 domain-containing transcription factor VRN1
blastp_kegg lcl|pxb:103937291 2 384 + 383 Gaps:8 92.25 413 67.98 0.0 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|pper:PRUPE_ppa006275mg 2 391 + 390 Gaps:36 92.07 391 72.78 3e-175 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_011G050600g 6 391 + 386 Gaps:26 92.56 430 64.57 3e-171 hypothetical protein
blastp_kegg lcl|cam:101507442 7 389 + 383 Gaps:14 88.76 436 63.05 2e-165 B3 domain-containing transcription factor VRN1-like
blastp_kegg lcl|mtr:MTR_4g068320 6 389 + 384 Gaps:13 88.81 429 62.99 5e-164 B3 domain-containing transcription factor VRN1
blastp_kegg lcl|fve:101302800 2 391 + 390 Gaps:23 93.32 419 63.43 7e-164 B3 domain-containing transcription factor VRN1-like
blastp_uniprot_sprot sp|Q8L3W1|VRN1_ARATH 2 367 + 366 Gaps:67 90.62 341 61.49 2e-119 B3 domain-containing transcription factor VRN1 OS Arabidopsis thaliana GN VRN1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9XIB5|REM19_ARATH 198 367 + 170 Gaps:1 74.78 226 69.82 4e-76 B3 domain-containing protein REM19 OS Arabidopsis thaliana GN REM19 PE 1 SV 1
blastp_uniprot_sprot sp|Q8S2E6|Y1235_ORYSJ 6 369 + 364 Gaps:59 81.34 402 26.91 3e-22 B3 domain-containing protein Os01g0723500 OS Oryza sativa subsp. japonica GN Os01g0723500 PE 3 SV 1
blastp_uniprot_sprot sp|Q2R9D2|Y1176_ORYSJ 10 368 + 359 Gaps:57 81.77 406 30.72 7e-21 B3 domain-containing protein Os11g0197600 OS Oryza sativa subsp. japonica GN Os11g0197600 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZSH7|Y4158_ARATH 7 77 + 71 none 37.37 190 49.30 4e-15 B3 domain-containing protein At4g01580 OS Arabidopsis thaliana GN At4g01580 PE 2 SV 1
blastp_uniprot_sprot sp|Q84R27|Y3896_ARATH 7 77 + 71 none 33.97 209 47.89 2e-14 B3 domain-containing protein At3g18960 OS Arabidopsis thaliana GN At3g18960 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIB4|Y1475_ARATH 7 77 + 71 none 37.37 190 40.85 1e-11 B3 domain-containing protein At1g49475 OS Arabidopsis thaliana GN At1g49475 PE 2 SV 2
blastp_uniprot_sprot sp|Q2QMT2|Y1223_ORYSJ 201 375 + 175 Gaps:14 52.23 358 29.41 7e-09 B3 domain-containing protein Os12g0592300 OS Oryza sativa subsp. japonica GN Os12g0592300 PE 2 SV 2
blastp_uniprot_sprot sp|Q2QMT7|Y1214_ORYSJ 3 90 + 88 Gaps:5 24.96 661 39.39 2e-08 B3 domain-containing protein Os12g0591400 OS Oryza sativa subsp. japonica GN Os12g0591300 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QMT5|Y1209_ORYSJ 201 354 + 154 Gaps:16 46.71 334 30.13 6e-08 B3 domain-containing protein LOC_Os12g40090 OS Oryza sativa subsp. japonica GN Os12g0591500 PE 2 SV 1
rpsblast_cdd gnl|CDD|197383 10 366 + 357 Gaps:7 100.00 98 54.08 1e-15 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.
rpsblast_cdd gnl|CDD|198087 11 362 + 352 Gaps:5 96.88 96 48.39 2e-13 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|202217 5 362 + 358 Gaps:5 94.85 97 47.83 1e-12 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 209 374 166 PTHR31920:SF15 none none none
Coils 199 220 22 Coil none none none
PANTHER 209 374 166 PTHR31920 none none none
SUPERFAMILY 266 365 100 SSF101936 none none IPR015300
ProSiteProfiles 1 71 71 PS50863 none B3 DNA-binding domain profile. IPR003340
Pfam 11 69 59 PF02362 none B3 DNA binding domain IPR003340
Pfam 276 357 82 PF02362 none B3 DNA binding domain IPR003340
SUPERFAMILY 6 69 64 SSF101936 none none IPR015300
ProSiteProfiles 273 366 94 PS50863 none B3 DNA-binding domain profile. IPR003340
Gene3D 265 364 100 G3DSA:2.40.330.10 none none IPR015300
Gene3D 6 69 64 G3DSA:2.40.330.10 none none IPR015300
SMART 1 71 71 SM01019 none B3 DNA binding domain IPR003340
SMART 273 368 96 SM01019 none B3 DNA binding domain IPR003340

0 Localization

6 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting