Protein : Qrob_P0009940.2 Q. robur
Protein Identifier  ? Qrob_P0009940.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PF03754 - Domain of unknown function (DUF313) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 255  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

16 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s40760g 7 254 + 248 Gaps:26 93.91 279 41.60 6e-43 hypothetical protein
blastp_kegg lcl|pmum:103340938 27 252 + 226 Gaps:20 89.15 258 38.70 5e-39 uncharacterized LOC103340938
blastp_kegg lcl|pmum:103340937 38 252 + 215 Gaps:21 75.49 257 40.21 7e-38 uncharacterized LOC103340937
blastp_kegg lcl|pper:PRUPE_ppa023842mg 28 252 + 225 Gaps:20 95.02 241 39.30 1e-37 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa015816mg 27 245 + 219 Gaps:18 94.49 236 38.12 6e-36 hypothetical protein
blastp_kegg lcl|pxb:103965291 91 252 + 162 Gaps:7 94.51 164 45.16 2e-35 putative B3 domain-containing protein At4g03170
blastp_kegg lcl|mdm:103406918 107 254 + 148 Gaps:7 54.02 261 46.81 2e-34 uncharacterized LOC103406918
blastp_kegg lcl|tcc:TCM_037820 16 253 + 238 Gaps:15 96.57 233 40.00 2e-34 B3 domain-containing protein putative
blastp_kegg lcl|tcc:TCM_033025 108 250 + 143 Gaps:6 62.05 224 50.36 6e-34 hypothetical protein
blastp_kegg lcl|mdm:103452848 107 254 + 148 Gaps:7 34.22 412 46.81 9e-34 uncharacterized LOC103452848
blastp_uniprot_sprot sp|Q9ZR14|Y4317_ARATH 97 237 + 141 Gaps:4 55.60 250 39.57 2e-18 Putative B3 domain-containing protein At4g03170 OS Arabidopsis thaliana GN At4g03170 PE 3 SV 1
blastp_uniprot_sprot sp|Q9ZR15|Y4316_ARATH 133 251 + 119 Gaps:3 60.42 192 35.34 3e-15 Putative B3 domain-containing protein At4g03160 OS Arabidopsis thaliana GN At4g03160 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LM90|Y1060_ARATH 127 228 + 102 Gaps:1 43.46 237 35.92 4e-12 B3 domain-containing protein At1g20600 OS Arabidopsis thaliana GN At1g20600 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XIP5|Y2741_ARATH 132 242 + 111 Gaps:18 46.30 257 31.93 5e-07 Putative B3 domain-containing protein At2g27410 OS Arabidopsis thaliana GN At2g27410 PE 3 SV 2
rpsblast_cdd gnl|CDD|202758 130 202 + 73 Gaps:15 75.00 112 34.52 4e-08 pfam03754 DUF313 Domain of unknown function (DUF313). Family of proteins from Arabidopsis thaliana with uncharacterized function.
rpsblast_cdd gnl|CDD|197383 130 238 + 109 Gaps:26 96.94 98 26.32 2e-07 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

4 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 131 241 111 PS50863 none B3 DNA-binding domain profile. IPR003340
Gene3D 130 215 86 G3DSA:2.40.330.10 none none IPR015300
SUPERFAMILY 130 214 85 SSF101936 none none IPR015300
Pfam 129 203 75 PF03754 none Domain of unknown function (DUF313) IPR005508

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

0 Targeting