Protein : Qrob_P0008710.2 Q. robur
Protein Identifier  ? Qrob_P0008710.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K11991 - tRNA-specific adenosine deaminase [EC:3.5.4.-] Code Enzyme  EC:3.5.4.33
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1421  
Kegg Orthology  K11991
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0002100 tRNA wobble adenosine to inosine editing The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine.
GO:0008251 tRNA-specific adenosine deaminase activity Catalysis of the reaction: adenosine + H2O = inosine + NH3, in a tRNA molecule.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259373 259 1420 + 1162 Gaps:32 88.97 1342 54.10 0.0 tRNA-specific adenosine deaminase chloroplastic-like
blastp_kegg lcl|mdm:103423767 1 1420 + 1420 Gaps:228 100.00 1454 47.94 0.0 tRNA(adenine(34)) deaminase chloroplastic-like
blastp_kegg lcl|mdm:103414259 1 1420 + 1420 Gaps:228 100.00 1454 47.87 0.0 tRNA(adenine(34)) deaminase chloroplastic-like
blastp_kegg lcl|pop:POPTR_0008s11050g 254 1420 + 1167 Gaps:46 87.02 1364 50.80 0.0 POPTRDRAFT_765974 cytidine/deoxycytidylate deaminase family protein
blastp_kegg lcl|pxb:103947339 1 1420 + 1420 Gaps:149 100.00 1455 46.60 0.0 tRNA(adenine(34)) deaminase chloroplastic-like
blastp_kegg lcl|pxb:103947334 1 1420 + 1420 Gaps:149 100.00 1455 46.60 0.0 tRNA(adenine(34)) deaminase chloroplastic-like
blastp_kegg lcl|tcc:TCM_011900 9 1420 + 1412 Gaps:158 99.01 1317 49.62 0.0 TRNA arginine adenosine deaminase putative isoform 1
blastp_kegg lcl|cit:102613873 221 1420 + 1200 Gaps:62 98.10 1209 50.93 0.0 tRNA(adenine(34)) deaminase chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10030527mg 1 1420 + 1420 Gaps:85 100.00 1342 52.01 0.0 hypothetical protein
blastp_kegg lcl|mdm:103423889 318 1420 + 1103 Gaps:166 99.91 1096 48.95 0.0 tRNA(adenine(34)) deaminase chloroplastic-like
blastp_pdb 3ocq_A 1220 1383 + 164 Gaps:20 79.78 183 47.26 1e-29 mol:protein length:183 Putative Cytosine/adenosine deaminase
blastp_pdb 2b3j_D 1219 1386 + 168 Gaps:18 94.34 159 44.67 1e-29 mol:protein length:159 tRNA adenosine deaminase
blastp_pdb 2b3j_C 1219 1386 + 168 Gaps:18 94.34 159 44.67 1e-29 mol:protein length:159 tRNA adenosine deaminase
blastp_pdb 2b3j_B 1219 1386 + 168 Gaps:18 94.34 159 44.67 1e-29 mol:protein length:159 tRNA adenosine deaminase
blastp_pdb 2b3j_A 1219 1386 + 168 Gaps:18 94.34 159 44.67 1e-29 mol:protein length:159 tRNA adenosine deaminase
blastp_pdb 1z3a_B 1213 1383 + 171 Gaps:20 91.07 168 44.44 1e-28 mol:protein length:168 tRNA-specific adenosine deaminase
blastp_pdb 1z3a_A 1213 1383 + 171 Gaps:20 91.07 168 44.44 1e-28 mol:protein length:168 tRNA-specific adenosine deaminase
blastp_pdb 2nx8_A 1222 1389 + 168 Gaps:21 82.12 179 44.90 5e-28 mol:protein length:179 TRNA-specific adenosine deaminase
blastp_pdb 1wwr_D 1220 1324 + 105 none 61.40 171 51.43 1e-24 mol:protein length:171 tRNA adenosine deaminase TadA
blastp_pdb 1wwr_C 1220 1324 + 105 none 61.40 171 51.43 1e-24 mol:protein length:171 tRNA adenosine deaminase TadA
blastp_uniprot_sprot sp|Q9S7I0|TADA_ARATH 416 1420 + 1005 Gaps:141 77.12 1307 42.06 1e-177 tRNA(adenine(34)) deaminase chloroplastic OS Arabidopsis thaliana GN TADA PE 1 SV 1
blastp_uniprot_sprot sp|P21335|TADA_BACSU 1219 1379 + 161 Gaps:18 88.82 161 50.35 2e-32 tRNA-specific adenosine deaminase OS Bacillus subtilis (strain 168) GN tadA PE 1 SV 1
blastp_uniprot_sprot sp|Q99W51|TADA_STAAM 1219 1386 + 168 Gaps:18 96.15 156 44.67 4e-29 tRNA-specific adenosine deaminase OS Staphylococcus aureus (strain Mu50 / ATCC 700699) GN tadA PE 1 SV 1
blastp_uniprot_sprot sp|Q7CQ08|TADA_SALTY 1220 1383 + 164 Gaps:20 84.88 172 47.26 7e-29 tRNA-specific adenosine deaminase OS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN tadA PE 3 SV 2
blastp_uniprot_sprot sp|Q8XGY4|TADA_SALTI 1220 1383 + 164 Gaps:20 84.88 172 47.26 7e-29 tRNA-specific adenosine deaminase OS Salmonella typhi GN tadA PE 3 SV 2
blastp_uniprot_sprot sp|Q8P2R7|TADA_STRP8 1222 1390 + 169 Gaps:21 93.08 159 45.27 3e-28 tRNA-specific adenosine deaminase OS Streptococcus pyogenes serotype M18 (strain MGAS8232) GN tadA PE 3 SV 1
blastp_uniprot_sprot sp|P44931|TADA_HAEIN 1207 1386 + 180 Gaps:22 92.49 173 46.25 4e-28 tRNA-specific adenosine deaminase OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN tadA PE 3 SV 1
blastp_uniprot_sprot sp|P0DA21|TADA_STRPQ 1222 1389 + 168 Gaps:21 85.96 171 45.58 4e-28 tRNA-specific adenosine deaminase OS Streptococcus pyogenes serotype M3 (strain SSI-1) GN tadA PE 3 SV 1
blastp_uniprot_sprot sp|Q5XE14|TADA_STRP6 1222 1389 + 168 Gaps:21 85.96 171 45.58 4e-28 tRNA-specific adenosine deaminase OS Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN tadA PE 1 SV 2
blastp_uniprot_sprot sp|P0DA20|TADA_STRP3 1222 1389 + 168 Gaps:21 85.96 171 45.58 4e-28 tRNA-specific adenosine deaminase OS Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN tadA PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 1217 1339 123 PS51747 none Cytidine and deoxycytidylate deaminases domain profile. IPR002125
Pfam 1218 1316 99 PF00383 none Cytidine and deoxycytidylate deaminase zinc-binding region IPR002125
PANTHER 1211 1336 126 PTHR11079 none none none
PANTHER 1353 1384 32 PTHR11079 none none none
SUPERFAMILY 1204 1384 181 SSF53927 none none IPR016193
Gene3D 1204 1379 176 G3DSA:3.40.140.10 none none none
Hamap 1223 1382 160 MF_00972 none tRNA-specific adenosine deaminase [tadA]. IPR028883

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting