Protein : Qrob_P0008040.2 Q. robur
Protein Identifier  ? Qrob_P0008040.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=3) PTHR11562:SF21 - PROTEIN R02F11.3, ISOFORM B (PTHR11562:SF21) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 347  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006812 cation transport The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO:0008324 cation transmembrane transporter activity Enables the transfer of cation from one side of the membrane to the other.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_040309 10 345 + 336 Gaps:2 83.05 407 80.77 0.0 Metal tolerance protein 4 isoform 1
blastp_kegg lcl|csv:101215946 11 345 + 335 Gaps:1 81.86 408 79.34 0.0 MTP8 metal tolerance protein 4-like
blastp_kegg lcl|csv:101229194 11 345 + 335 Gaps:1 81.86 408 79.34 0.0 metal tolerance protein 4-like
blastp_kegg lcl|fve:101292877 10 345 + 336 Gaps:1 83.33 402 78.81 0.0 metal tolerance protein 4-like
blastp_kegg lcl|atr:s00024p00174810 10 345 + 336 Gaps:1 83.83 402 78.64 0.0 AMTR_s00024p00174810 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10011857mg 7 346 + 340 Gaps:1 82.77 412 78.30 0.0 hypothetical protein
blastp_kegg lcl|cam:101513702 10 345 + 336 Gaps:1 81.71 410 78.81 0.0 metal tolerance protein 4-like
blastp_kegg lcl|cit:102618308 7 346 + 340 Gaps:1 82.77 412 78.30 0.0 metal tolerance protein 4-like
blastp_kegg lcl|cit:102617741 10 345 + 336 Gaps:1 81.71 410 79.10 0.0 metal tolerance protein 4-like
blastp_kegg lcl|mdm:103452443 10 345 + 336 Gaps:1 82.31 407 79.10 0.0 metal tolerance protein 4
blastp_pdb 2qfi_B 62 341 + 280 Gaps:30 92.67 300 22.30 6e-11 mol:protein length:300 Ferrous-iron efflux pump fieF
blastp_pdb 2qfi_A 62 341 + 280 Gaps:30 92.67 300 22.30 6e-11 mol:protein length:300 Ferrous-iron efflux pump fieF
blastp_pdb 3h90_D 62 326 + 265 Gaps:29 93.29 283 21.97 1e-10 mol:protein length:283 Ferrous-iron efflux pump fieF
blastp_pdb 3h90_C 62 326 + 265 Gaps:29 93.29 283 21.97 1e-10 mol:protein length:283 Ferrous-iron efflux pump fieF
blastp_pdb 3h90_B 62 326 + 265 Gaps:29 93.29 283 21.97 1e-10 mol:protein length:283 Ferrous-iron efflux pump fieF
blastp_pdb 3h90_A 62 326 + 265 Gaps:29 93.29 283 21.97 1e-10 mol:protein length:283 Ferrous-iron efflux pump fieF
blastp_uniprot_sprot sp|Q10PP8|MTP4_ORYSJ 10 345 + 336 Gaps:1 84.89 397 76.26 0.0 Metal tolerance protein 4 OS Oryza sativa subsp. japonica GN MTP4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M2P2|MTPC3_ARATH 11 344 + 334 Gaps:8 83.21 411 74.85 0.0 Putative metal tolerance protein C3 OS Arabidopsis thaliana GN MTPC3 PE 3 SV 2
blastp_uniprot_sprot sp|Q6Z7K5|MTP3_ORYSJ 10 345 + 336 Gaps:6 83.41 410 68.71 4e-177 Metal tolerance protein 3 OS Oryza sativa subsp. japonica GN MTP3 PE 2 SV 1
blastp_uniprot_sprot sp|Q5NA18|MTP5_ORYSJ 13 337 + 325 Gaps:4 79.28 415 57.75 4e-125 Metal tolerance protein 5 OS Oryza sativa subsp. japonica GN MTP5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SAJ7|MTP9_ARATH 13 335 + 323 Gaps:6 81.34 402 57.49 2e-121 Metal tolerance protein 9 OS Arabidopsis thaliana GN MTP9 PE 2 SV 2
blastp_uniprot_sprot sp|Q0WU02|MTP10_ARATH 13 335 + 323 Gaps:6 76.40 428 55.96 2e-119 Metal tolerance protein 10 OS Arabidopsis thaliana GN MTP10 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LDU0|MTP7_ORYSJ 13 335 + 323 Gaps:7 83.89 391 56.10 2e-118 Metal tolerance protein 7 OS Oryza sativa subsp. japonica GN MTP7 PE 2 SV 1
blastp_uniprot_sprot sp|O80632|MTP11_ARATH 13 336 + 324 Gaps:4 83.25 394 56.40 1e-103 Metal tolerance protein 11 OS Arabidopsis thaliana GN MTP11 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DHJ5|MTP6_ORYSJ 13 336 + 324 Gaps:43 76.86 376 56.75 5e-92 Metal tolerance protein 6 OS Oryza sativa subsp. japonica GN MTP6 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZCC5|P34_RICPR 49 319 + 271 Gaps:15 91.33 300 27.37 1e-17 Protein p34 OS Rickettsia prowazekii (strain Madrid E) GN p34 PE 3 SV 1
rpsblast_cdd gnl|CDD|30402 50 342 + 293 Gaps:12 96.38 304 26.28 1e-35 COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].
rpsblast_cdd gnl|CDD|201849 62 332 + 271 Gaps:16 100.00 273 24.91 5e-34 pfam01545 Cation_efflux Cation efflux family. Members of this family are integral membrane proteins that are found to increase tolerance to divalent metal ions such as cadmium zinc and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells.
rpsblast_cdd gnl|CDD|211639 62 326 + 265 Gaps:15 99.25 268 24.06 1e-23 TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters a number of which have been shown to transport divalent cations of cobalt cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts often containing low-complexity sequence.
rpsblast_cdd gnl|CDD|31423 48 328 + 281 Gaps:13 93.24 296 18.48 9e-10 COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].

21 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 250 328 79 SSF160240 none none none
Phobius 78 99 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 100 119 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 120 139 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
TIGRFAM 50 326 277 TIGR01297 none CDF: cation diffusion facilitator family transporter IPR002524
Phobius 159 179 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 11 345 335 PTHR11562:SF21 none none none
Phobius 191 209 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 11 345 335 PTHR11562 none none IPR002524
Gene3D 50 246 197 G3DSA:1.20.1510.10 none none IPR027469
Phobius 1 54 54 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 180 190 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 210 214 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 140 158 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 55 72 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 234 346 113 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 48 248 201 SSF161111 none none none
Phobius 73 77 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 215 233 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 249 326 78 G3DSA:3.30.70.1350 none none IPR027470
Pfam 55 330 276 PF01545 none Cation efflux family IPR002524

5 Localization

Analysis Start End Length
TMHMM 55 72 17
TMHMM 120 142 22
TMHMM 200 219 19
TMHMM 157 179 22
TMHMM 77 99 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03

0 Targeting