Protein : Qrob_P0006280.2 Q. robur
Protein Identifier  ? Qrob_P0006280.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=16) PF10536 - Plant mobile domain Code Enzyme  EC:3.1.3.16
Gene Prediction Quality  validated Protein length 

Sequence

Length: 259  
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0 Synonyms

0 GO Terms

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0013s01560g 5 241 + 237 Gaps:31 29.58 879 32.69 1e-27 POPTRDRAFT_570767 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s02360g 5 241 + 237 Gaps:31 28.54 911 31.15 7e-25 hypothetical protein
blastp_kegg lcl|fve:101301378 9 179 + 171 Gaps:34 12.17 1570 32.46 2e-20 uncharacterized protein LOC101301378
blastp_kegg lcl|pmum:103330039 9 179 + 171 Gaps:30 20.41 936 31.41 6e-19 uncharacterized LOC103330039
blastp_kegg lcl|sot:102600362 1 217 + 217 Gaps:34 31.78 708 28.89 1e-17 uncharacterized LOC102600362
blastp_kegg lcl|tcc:TCM_030959 9 186 + 178 Gaps:56 67.52 311 30.48 2e-16 C globular stage-like protein
blastp_kegg lcl|mdm:103448139 9 179 + 171 Gaps:34 18.84 1014 31.41 3e-15 uncharacterized LOC103448139
blastp_kegg lcl|pmum:103328417 1 182 + 182 Gaps:37 61.34 357 26.94 3e-15 uncharacterized LOC103328417
blastp_kegg lcl|pxb:103958322 9 179 + 171 Gaps:34 18.85 1013 31.41 5e-15 uncharacterized LOC103958322
blastp_kegg lcl|pmum:103331091 1 179 + 179 Gaps:36 63.75 309 29.44 1e-14 uncharacterized LOC103331091
rpsblast_cdd gnl|CDD|204506 12 183 + 172 Gaps:34 56.58 357 30.20 1e-21 pfam10536 PMD Plant mobile domain. This domain was identified by Babu and colleagues in a variety of transposases.

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 182 239 58 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 119 141 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 258 258 1 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 130 184 55 PF10536 none Plant mobile domain IPR019557
Pfam 12 128 117 PF10536 none Plant mobile domain IPR019557
Phobius 240 257 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 161 181 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 118 118 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 142 160 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

3 Localization

Analysis Start End Length
TMHMM 118 140 22
TMHMM 240 257 17
TMHMM 160 182 22

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 45   Secretory pathway 5 0.732 0.030 NON-PLANT 45