Protein : Qrob_P0006200.2 Q. robur
Protein Identifier  ? Qrob_P0006200.2 Organism . Name  Quercus robur
Score  84.2 Score Type  egn
Protein Description  (M=1) PF08167 - rRNA processing/ribosome biogenesis Gene Prediction Quality  validated
Protein length 

Sequence

Length: 250  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100256091 1 210 + 210 Gaps:1 23.16 911 70.62 7e-103 uncharacterized LOC100256091
blastp_kegg lcl|pda:103719992 1 210 + 210 none 23.81 882 62.38 4e-95 proline- glutamic acid- and leucine-rich protein 1
blastp_kegg lcl|gmx:100800871 1 210 + 210 none 23.78 883 65.24 2e-93 proline- glutamic acid- and leucine-rich protein 1-like
blastp_kegg lcl|gmx:100803198 1 210 + 210 none 23.73 885 64.76 1e-91 uncharacterized LOC100803198
blastp_kegg lcl|pxb:103933550 1 210 + 210 Gaps:5 24.32 876 66.20 4e-91 uncharacterized LOC103933550
blastp_kegg lcl|pmum:103327264 1 210 + 210 Gaps:4 24.21 884 63.08 1e-90 uncharacterized LOC103327264
blastp_kegg lcl|fve:101297648 2 210 + 209 none 25.12 832 63.16 5e-89 uncharacterized protein LOC101297648
blastp_kegg lcl|cmo:103489393 1 210 + 210 Gaps:3 26.04 795 65.22 8e-89 uncharacterized LOC103489393
blastp_kegg lcl|rcu:RCOM_0888110 1 210 + 210 Gaps:4 24.80 863 66.82 4e-88 hypothetical protein
blastp_kegg lcl|sly:101268822 1 210 + 210 none 24.65 852 63.81 2e-87 uncharacterized LOC101268822
rpsblast_cdd gnl|CDD|191958 41 201 + 161 Gaps:18 88.96 163 24.14 1e-16 pfam08167 RIX1 rRNA processing/ribosome biogenesis. Rix1 is a nucleoplasmic particle involved in rRNA processing/ribosome assembly. It associates with two other proteins Ipi1 and Ipi3 to form the RIX1 complex that allows Rea1 - the AAA ATPase - to associate with the 60S ribosomal subunit. More than 170 assembly factors are involved in the construction and maturation of yeast ribosomes and after these factors have completed their function they need to be released from the pre-ribosomes. Rea1 induces the release of the assembly protein complex in a mechanical fashion. This family is usually associated with NUC202 pfam08166.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 90 206 117 G3DSA:1.25.10.10 none none IPR011989
SUPERFAMILY 30 206 177 SSF48371 none none IPR016024
Pfam 42 207 166 PF08167 none rRNA processing/ribosome biogenesis IPR012583

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting