Protein : Qrob_P0006120.2 Q. robur
Protein Identifier  ? Qrob_P0006120.2 Organism . Name  Quercus robur
Score  8.7 Score Type  egn
Protein Description  (M=84) PF00646//PF08268 - F-box domain // F-box associated domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 387  
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|sot:102585877 16 323 + 308 Gaps:33 74.88 402 34.55 2e-41 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pxb:103933891 11 379 + 369 Gaps:60 97.78 361 34.84 5e-41 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|sly:101260766 16 311 + 296 Gaps:33 71.89 402 35.29 7e-40 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|sot:102598253 17 314 + 298 Gaps:38 80.31 386 34.19 3e-39 F-box protein CPR30-like
blastp_kegg lcl|sot:102600727 17 311 + 295 Gaps:32 76.25 379 38.06 7e-39 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|pxb:103945397 16 379 + 364 Gaps:68 98.38 370 35.99 4e-38 F-box protein At3g07870-like
blastp_kegg lcl|tcc:TCM_046272 15 378 + 364 Gaps:60 99.16 357 33.62 4e-38 F-box family protein
blastp_kegg lcl|sot:102605926 17 316 + 300 Gaps:38 80.00 370 34.46 2e-37 F-box/kelch-repeat protein At3g23880-like
blastp_kegg lcl|mdm:103411840 13 379 + 367 Gaps:58 98.59 354 33.52 2e-37 F-box/kelch-repeat protein At3g06240-like
blastp_kegg lcl|sot:102580998 17 311 + 295 Gaps:33 87.80 328 35.76 3e-37 F-box/kelch-repeat protein At3g23880-like
blastp_uniprot_sprot sp|Q8GXC7|FBK50_ARATH 17 319 + 303 Gaps:58 77.99 427 28.23 2e-26 F-box/kelch-repeat protein At3g06240 OS Arabidopsis thaliana GN At3g06240 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SU30|CPR30_ARATH 17 353 + 337 Gaps:63 82.32 413 30.00 4e-21 F-box protein CPR30 OS Arabidopsis thaliana GN CPR30 PE 1 SV 2
blastp_uniprot_sprot sp|Q9LIR8|FBK67_ARATH 15 311 + 297 Gaps:33 79.67 364 28.62 6e-18 F-box/kelch-repeat protein At3g23880 OS Arabidopsis thaliana GN At3g23880 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M0Q9|FB223_ARATH 11 305 + 295 Gaps:45 71.02 383 27.21 1e-14 Putative F-box protein At4g09190 OS Arabidopsis thaliana GN At4g09190 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SFC7|FB135_ARATH 17 311 + 295 Gaps:62 72.18 417 28.24 1e-14 F-box protein At3g07870 OS Arabidopsis thaliana GN At3g07870 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LJC0|FB170_ARATH 16 263 + 248 Gaps:21 65.67 367 29.88 2e-14 Putative F-box protein At3g21120 OS Arabidopsis thaliana GN At3g21120 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SXA0|FB42_ARATH 17 297 + 281 Gaps:42 68.29 391 30.71 2e-14 Putative F-box protein At1g47730 OS Arabidopsis thaliana GN At1g47730 PE 4 SV 1
blastp_uniprot_sprot sp|Q9SAB5|FBLK2_ARATH 17 325 + 309 Gaps:40 82.92 363 26.91 3e-14 Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS Arabidopsis thaliana GN At1g11620 PE 4 SV 1
blastp_uniprot_sprot sp|Q3ECE2|FB85_ARATH 17 307 + 291 Gaps:48 76.15 369 26.69 4e-14 Putative F-box protein At1g70960 OS Arabidopsis thaliana GN At1g70960 PE 4 SV 1
blastp_uniprot_sprot sp|Q9FZF8|FB44_ARATH 17 272 + 256 Gaps:46 63.75 389 31.85 6e-14 Putative F-box protein At1g47790 OS Arabidopsis thaliana GN At1g47790 PE 4 SV 1
rpsblast_cdd gnl|CDD|162458 123 341 + 219 Gaps:25 96.52 230 28.38 4e-26 TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646) a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 17 57 41 SM00256 none A Receptor for Ubiquitination Targets IPR001810
Gene3D 14 50 37 G3DSA:1.20.1280.50 none none none
TIGRFAM 125 338 214 TIGR01640 none F_box_assoc_1: F-box protein interaction domain IPR017451
Pfam 16 53 38 PF00646 none F-box domain IPR001810
PANTHER 1 312 312 PTHR31790 none none none
Pfam 225 312 88 PF08268 none F-box associated domain IPR013187
SUPERFAMILY 16 63 48 SSF81383 none none IPR001810
SUPERFAMILY 136 358 223 SSF50965 none none IPR011043
PANTHER 1 312 312 PTHR31790:SF2 none none none
ProSiteProfiles 11 57 47 PS50181 none F-box domain profile. IPR001810

0 Localization

18 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2
Bourran2_2014_nPriBD*_3P Qrob_Chr06 6 s_1B6WLL_980 v_10064_133 11,49 0 31,52 lod 4,1208 9,1

0 Targeting