Protein : Qrob_P0005900.2 Q. robur
Protein Identifier  ? Qrob_P0005900.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K16284 - E3 ubiquitin-protein ligase SIS3 [EC:2.3.2.27] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 322  
Kegg Orthology  K16284
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.

31 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1510800 1 318 + 318 Gaps:1 83.73 381 82.76 0.0 protein binding protein putative
blastp_kegg lcl|mtr:MTR_4g106960 1 306 + 306 Gaps:1 84.11 365 84.69 0.0 RING finger protein
blastp_kegg lcl|cam:101492805 1 306 + 306 Gaps:1 78.32 392 84.04 0.0 E3 ubiquitin-protein ligase SIS3-like
blastp_kegg lcl|pper:PRUPEppa007048m2g 1 315 + 315 Gaps:4 94.10 339 84.33 0.0 hypothetical protein
blastp_kegg lcl|fve:101299379 1 318 + 318 Gaps:5 82.89 380 82.86 0.0 E3 ubiquitin-protein ligase SIS3-like
blastp_kegg lcl|pmum:103338335 1 315 + 315 Gaps:4 83.07 384 84.01 0.0 E3 ubiquitin-protein ligase SIS3
blastp_kegg lcl|vvi:100260484 1 318 + 318 Gaps:1 83.73 381 82.45 0.0 E3 ubiquitin-protein ligase SIS3-like
blastp_kegg lcl|pvu:PHAVU_003G199700g 1 311 + 311 Gaps:1 81.68 382 85.90 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_012048 1 309 + 309 Gaps:2 82.06 379 83.92 0.0 Sugar-insensitive 3 isoform 1
blastp_kegg lcl|mdm:103437728 1 315 + 315 Gaps:2 82.77 383 82.02 0.0 E3 ubiquitin-protein ligase SIS3-like
blastp_pdb 2l0b_A 150 226 + 77 Gaps:1 83.52 91 39.47 2e-09 mol:protein length:91 E3 ubiquitin-protein ligase Praja-1
blastp_pdb 2kiz_A 177 222 + 46 none 66.67 69 50.00 2e-09 mol:protein length:69 E3 ubiquitin-protein ligase Arkadia
blastp_pdb 2ect_A 177 219 + 43 none 55.13 78 51.16 3e-08 mol:protein length:78 RING finger protein 126
blastp_pdb 1iym_A 177 222 + 46 Gaps:1 85.45 55 51.06 7e-08 mol:protein length:55 EL5
blastp_pdb 1x4j_A 162 225 + 64 Gaps:2 88.00 75 34.85 2e-07 mol:protein length:75 RING finger protein 38
blastp_pdb 2ep4_A 178 232 + 55 Gaps:3 70.27 74 42.31 2e-06 mol:protein length:74 RING finger protein 24
blastp_uniprot_sprot sp|Q8GYT9|SIS3_ARATH 1 309 + 309 Gaps:18 83.52 358 75.92 2e-155 E3 ubiquitin-protein ligase SIS3 OS Arabidopsis thaliana GN SIS3 PE 2 SV 2
blastp_uniprot_sprot sp|Q9FKX5|NIPL1_ARATH 143 219 + 77 Gaps:1 35.29 221 37.18 2e-12 NEP1-interacting protein-like 1 OS Arabidopsis thaliana GN ATL27 PE 2 SV 1
blastp_uniprot_sprot sp|Q93Z92|RING4_ARATH 146 227 + 82 Gaps:27 27.95 390 33.03 2e-11 E3 ubiquitin-protein ligase At4g11680 OS Arabidopsis thaliana GN At4g11680 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LM69|ATL80_ARATH 127 219 + 93 Gaps:7 47.72 197 40.43 2e-11 RING-H2 finger protein ATL80 OS Arabidopsis thaliana GN ATL80 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FHG8|ATL50_ARATH 154 219 + 66 Gaps:4 33.33 210 45.71 3e-11 Putative RING-H2 finger protein ATL50 OS Arabidopsis thaliana GN ATL50 PE 3 SV 1
blastp_uniprot_sprot sp|Q8GT74|NIP2_ARATH 135 219 + 85 Gaps:8 38.59 241 37.63 4e-11 NEP1-interacting protein 2 OS Arabidopsis thaliana GN NIP2 PE 1 SV 1
blastp_uniprot_sprot sp|Q67YI6|ATL65_ARATH 169 297 + 129 Gaps:20 30.90 411 34.65 4e-11 RING-H2 finger protein ATL65 OS Arabidopsis thaliana GN ATL65 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SN28|ATL7_ARATH 176 298 + 123 Gaps:13 50.00 236 35.59 1e-10 RING-H2 finger protein ATL7 OS Arabidopsis thaliana GN ATL7 PE 2 SV 1
blastp_uniprot_sprot sp|Q8RX29|ATL70_ARATH 157 248 + 92 Gaps:7 41.94 217 43.96 2e-10 RING-H2 finger protein ATL70 OS Arabidopsis thaliana GN ATL70 PE 2 SV 1
blastp_uniprot_sprot sp|O22755|ATL44_ARATH 160 219 + 60 Gaps:10 37.84 185 44.29 2e-10 RING-H2 finger protein ATL44 OS Arabidopsis thaliana GN ATL44 PE 2 SV 1
rpsblast_cdd gnl|CDD|205816 177 219 + 43 none 93.48 46 62.79 4e-12 pfam13639 zf-RING_2 Ring finger domain.
rpsblast_cdd gnl|CDD|35099 177 224 + 48 Gaps:1 13.10 374 46.94 4e-09 COG5540 COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification protein turnover chaperones].
rpsblast_cdd gnl|CDD|29102 177 222 + 46 Gaps:3 100.00 45 53.33 3e-08 cd00162 RING RING-finger (Really Interesting New Gene) domain a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C probably involved in mediating protein-protein interactions identified in a proteins with a wide range of functions such as viral replication signal transduction and development has two variants the C3HC4-type and a C3H2C3-type (RING-H2 finger) which have different cysteine/histidine pattern a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
rpsblast_kog gnl|CDD|39828 153 259 + 107 Gaps:7 30.46 348 30.19 4e-14 KOG4628 KOG4628 KOG4628 Predicted E3 ubiquitin ligase [Posttranslational modification protein turnover chaperones].

14 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 50 68 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 27 27 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 93 321 229 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 178 219 42 PS50089 none Zinc finger RING-type profile. IPR001841
Phobius 28 49 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 174 222 49 G3DSA:3.30.40.10 none none IPR013083
SUPERFAMILY 160 227 68 SSF57850 none none none
PANTHER 17 115 99 PTHR22764 none none none
PANTHER 137 242 106 PTHR22764:SF7 none none none
PANTHER 17 115 99 PTHR22764:SF7 none none none
SMART 178 218 41 SM00184 none Ring finger IPR001841
PANTHER 137 242 106 PTHR22764 none none none
Phobius 69 92 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 177 219 43 PF13639 none Ring finger domain IPR001841

2 Localization

Analysis Start End Length
TMHMM 30 52 22
TMHMM 67 89 22

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting