Protein : Qrob_P0005750.2 Q. robur
Protein Identifier  ? Qrob_P0005750.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PF14159 - CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Gene Prediction Quality  validated
Protein length 

Sequence

Length: 172  
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0 Synonyms

0 GO Terms

17 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cam:101498254 8 171 + 164 Gaps:9 99.42 172 72.51 1e-74 uncharacterized LOC101498254
blastp_kegg lcl|pvu:PHAVU_010G108500g 16 171 + 156 Gaps:4 94.41 161 77.63 2e-73 hypothetical protein
blastp_kegg lcl|gmx:100305578 14 171 + 158 Gaps:8 95.71 163 77.56 4e-73 uncharacterized LOC100305578
blastp_kegg lcl|sot:102596366 21 171 + 151 Gaps:3 88.62 167 79.05 4e-73 protein CURVATURE THYLAKOID 1A chloroplastic-like
blastp_kegg lcl|gmx:100775367 14 171 + 158 Gaps:6 95.71 163 75.64 2e-71 protein CURVATURE THYLAKOID 1A chloroplastic-like
blastp_kegg lcl|tcc:TCM_005215 16 171 + 156 Gaps:6 92.02 163 76.67 2e-71 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1617300 25 171 + 147 Gaps:3 86.23 167 79.17 5e-71 Thylakoid membrane phosphoprotein 14 kDa chloroplast precursor putative
blastp_kegg lcl|brp:103858840 15 171 + 157 Gaps:6 93.37 166 70.97 2e-70 protein CURVATURE THYLAKOID 1A chloroplastic
blastp_kegg lcl|brp:103853325 10 171 + 162 Gaps:9 96.45 169 68.71 3e-69 protein CURVATURE THYLAKOID 1A chloroplastic-like
blastp_kegg lcl|sly:101260274 1 171 + 171 Gaps:6 100.00 169 66.27 9e-69 uncharacterized LOC101260274
blastp_uniprot_sprot sp|O04616|CUT1A_ARATH 10 171 + 162 Gaps:4 96.34 164 65.19 1e-67 Protein CURVATURE THYLAKOID 1A chloroplastic OS Arabidopsis thaliana GN CURT1A PE 1 SV 1
blastp_uniprot_sprot sp|Q8LDD3|CUT1D_ARATH 68 171 + 104 Gaps:5 51.30 193 47.47 9e-24 Protein CURVATURE THYLAKOID 1D chloroplastic OS Arabidopsis thaliana GN CURT1D PE 1 SV 1
blastp_uniprot_sprot sp|Q8LCA1|CUT1B_ARATH 88 170 + 83 none 47.70 174 40.96 1e-16 Protein CURVATURE THYLAKOID 1B chloroplastic OS Arabidopsis thaliana GN CURT1B PE 1 SV 2
blastp_uniprot_sprot sp|Q9M812|CUT1C_ARATH 71 168 + 98 Gaps:6 58.97 156 41.30 1e-14 Protein CURVATURE THYLAKOID 1C chloroplastic OS Arabidopsis thaliana GN CURT1C PE 1 SV 1
blastp_uniprot_sprot sp|Q119Z5|SYE_TRIEI 102 169 + 68 Gaps:2 7.95 881 41.43 3e-09 Glutamate--tRNA ligase OS Trichodesmium erythraeum (strain IMS101) GN gltX PE 3 SV 1
rpsblast_cdd gnl|CDD|206328 84 169 + 86 Gaps:4 100.00 90 51.11 3e-29 pfam14159 DUF4308 Domain of unknown function (DUF4308). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins.
rpsblast_cdd gnl|CDD|178376 12 170 + 159 Gaps:4 95.21 167 33.33 2e-19 PLN02777 PLN02777 photosystem I P subunit (PSI-P).

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 149 171 23 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 130 148 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 99 99 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 100 124 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 85 169 85 PF14159 none CAAD domains of cyanobacterial aminoacyl-tRNA synthetase IPR025564
Phobius 125 129 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

2 Localization

Analysis Start End Length
TMHMM 130 149 19
TMHMM 98 120 22

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 68   Mitochondrion 5 0.092 0.411 NON-PLANT 68