Protein : Qrob_P0005740.2 Q. robur
Protein Identifier  ? Qrob_P0005740.2 Organism . Name  Quercus robur
Score  54.0 Score Type  egn
Protein Description  (M=2) 6.3.5.5 - Carbamoyl-phosphate synthase (glutamine-hydrolyzing). Code Enzyme  EC:6.3.5.5
Gene Prediction Quality  validated Protein length 

Sequence

Length: 279  
Kegg Orthology  K01956
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0 Synonyms

0 GO Terms

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa019823mg 4 266 + 263 Gaps:55 88.83 358 64.47 2e-127 hypothetical protein
blastp_kegg lcl|tcc:TCM_001359 4 266 + 263 Gaps:89 82.82 425 59.94 7e-127 Carbamoyl phosphate synthetase A isoform 1
blastp_kegg lcl|mdm:103447071 1 266 + 266 Gaps:97 83.14 427 60.28 3e-126 carbamoyl-phosphate synthase small chain chloroplastic-like
blastp_kegg lcl|fve:101305472 4 266 + 263 Gaps:97 82.44 427 59.94 5e-126 carbamoyl-phosphate synthase small chain-like
blastp_kegg lcl|fve:101311362 4 266 + 263 Gaps:97 82.44 427 59.66 3e-125 carbamoyl-phosphate synthase small chain-like
blastp_kegg lcl|gmx:100788470 6 266 + 261 Gaps:95 79.45 438 59.48 9e-125 carbamoyl-phosphate synthase small chain-like
blastp_kegg lcl|pxb:103963749 1 266 + 266 Gaps:97 83.14 427 59.44 2e-124 carbamoyl-phosphate synthase small chain chloroplastic-like
blastp_kegg lcl|cmo:103488827 4 266 + 263 Gaps:97 81.48 432 59.38 3e-124 carbamoyl-phosphate synthase small chain chloroplastic
blastp_kegg lcl|csv:101222857 4 266 + 263 Gaps:97 81.48 432 59.38 4e-124 carbamoyl-phosphate synthase small chain-like
blastp_kegg lcl|mdm:103429814 1 266 + 266 Gaps:89 84.52 420 59.15 6e-124 carbamoyl-phosphate synthase small chain chloroplastic-like
blastp_pdb 1m6v_H 14 267 + 254 Gaps:1 48.43 382 52.43 4e-29 mol:protein length:382 carbamoyl-phosphate synthetase small chain
blastp_pdb 1m6v_F 14 267 + 254 Gaps:1 48.43 382 52.43 4e-29 mol:protein length:382 carbamoyl-phosphate synthetase small chain
blastp_pdb 1m6v_D 14 267 + 254 Gaps:1 48.43 382 52.43 4e-29 mol:protein length:382 carbamoyl-phosphate synthetase small chain
blastp_pdb 1m6v_B 14 267 + 254 Gaps:1 48.43 382 52.43 4e-29 mol:protein length:382 carbamoyl-phosphate synthetase small chain
blastp_pdb 1kee_H 14 267 + 254 Gaps:1 48.43 382 52.43 5e-29 mol:protein length:382 Carbamoyl-phosphate synthetase small chain
blastp_pdb 1kee_F 14 267 + 254 Gaps:1 48.43 382 52.43 5e-29 mol:protein length:382 Carbamoyl-phosphate synthetase small chain
blastp_pdb 1kee_D 14 267 + 254 Gaps:1 48.43 382 52.43 5e-29 mol:protein length:382 Carbamoyl-phosphate synthetase small chain
blastp_pdb 1kee_B 14 267 + 254 Gaps:1 48.43 382 52.43 5e-29 mol:protein length:382 Carbamoyl-phosphate synthetase small chain
blastp_pdb 1cs0_H 14 267 + 254 Gaps:1 48.43 382 52.43 5e-29 mol:protein length:382 CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT
blastp_pdb 1cs0_F 14 267 + 254 Gaps:1 48.43 382 52.43 5e-29 mol:protein length:382 CARBAMOYL PHOSPHATE SYNTHETASE: SMALL SUBUNIT
blastp_uniprot_sprot sp|Q6YV23|CARA_ORYSJ 5 266 + 262 Gaps:88 78.48 446 55.14 9e-116 Carbamoyl-phosphate synthase small chain chloroplastic OS Oryza sativa subsp. japonica GN CARA PE 2 SV 2
blastp_uniprot_sprot sp|Q9LVW7|CARA_ARATH 4 266 + 263 Gaps:89 81.86 430 54.26 8e-114 Carbamoyl-phosphate synthase small chain chloroplastic OS Arabidopsis thaliana GN CARA PE 1 SV 1
blastp_uniprot_sprot sp|O66727|CARA_AQUAE 14 267 + 254 Gaps:88 92.18 371 35.38 2e-59 Carbamoyl-phosphate synthase small chain OS Aquifex aeolicus (strain VF5) GN carA PE 3 SV 1
blastp_uniprot_sprot sp|Q4L5Q4|CARA_STAHJ 4 266 + 263 Gaps:79 90.16 366 36.97 5e-57 Carbamoyl-phosphate synthase small chain OS Staphylococcus haemolyticus (strain JCSC1435) GN carA PE 3 SV 1
blastp_uniprot_sprot sp|B4S5S1|CARA_PROA2 14 267 + 254 Gaps:90 90.57 371 36.01 1e-54 Carbamoyl-phosphate synthase small chain OS Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN carA PE 3 SV 1
blastp_uniprot_sprot sp|Q8RG87|CARA_FUSNN 13 277 + 265 Gaps:80 96.37 358 32.75 4e-54 Carbamoyl-phosphate synthase small chain OS Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN carA PE 3 SV 1
blastp_uniprot_sprot sp|Q8KZA0|CARA_DESVM 14 267 + 254 Gaps:107 91.76 376 35.36 6e-53 Carbamoyl-phosphate synthase small chain OS Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN carA PE 3 SV 1
blastp_uniprot_sprot sp|Q49WY3|CARA_STAS1 16 266 + 251 Gaps:85 88.52 366 34.26 8e-53 Carbamoyl-phosphate synthase small chain OS Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN carA PE 3 SV 1
blastp_uniprot_sprot sp|Q5HPY9|CARA_STAEQ 16 266 + 251 Gaps:73 88.52 366 34.26 2e-52 Carbamoyl-phosphate synthase small chain OS Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN carA PE 3 SV 1
blastp_uniprot_sprot sp|Q8CPJ5|CARA_STAES 16 266 + 251 Gaps:91 88.52 366 33.95 6e-52 Carbamoyl-phosphate synthase small chain OS Staphylococcus epidermidis (strain ATCC 12228) GN carA PE 3 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 16 259 244 PTHR11405 none none none
Gene3D 13 78 66 G3DSA:3.50.30.20 "KEGG:00240+6.3.5.5","KEGG:00250+6.3.5.5","MetaCyc:PWY-5154","MetaCyc:PWY-5686","MetaCyc:PWY-7400","UniPathway:UPA00068","UniPathway:UPA00070" none IPR002474
SUPERFAMILY 155 262 108 SSF52317 none none IPR029062
Pfam 155 256 102 PF00117 "Reactome:REACT_1698" Glutamine amidotransferase class-I IPR017926
SMART 12 99 88 SM01097 "KEGG:00240+6.3.5.5","KEGG:00250+6.3.5.5","MetaCyc:PWY-5154","MetaCyc:PWY-5686","MetaCyc:PWY-7400","UniPathway:UPA00068","UniPathway:UPA00070" Carbamoyl-phosphate synthase small chain, CPSase domain IPR002474
Gene3D 155 259 105 G3DSA:3.40.50.880 none none IPR029062
Pfam 13 87 75 PF00988 "KEGG:00240+6.3.5.5","KEGG:00250+6.3.5.5","MetaCyc:PWY-5154","MetaCyc:PWY-5686","MetaCyc:PWY-7400","UniPathway:UPA00068","UniPathway:UPA00070" Carbamoyl-phosphate synthase small chain, CPSase domain IPR002474
SUPERFAMILY 13 110 98 SSF52021 "KEGG:00240+6.3.5.5","KEGG:00250+6.3.5.5","MetaCyc:PWY-5154","MetaCyc:PWY-5686","MetaCyc:PWY-7400","UniPathway:UPA00068","UniPathway:UPA00070" none IPR002474
PRINTS 222 233 12 PR00099 none Carbamoyl-phosphate synthase protein GATase domain signature none
PRINTS 150 164 15 PR00099 none Carbamoyl-phosphate synthase protein GATase domain signature none
PRINTS 180 196 17 PR00099 none Carbamoyl-phosphate synthase protein GATase domain signature none
PRINTS 197 214 18 PR00099 none Carbamoyl-phosphate synthase protein GATase domain signature none
ProSiteProfiles 94 278 185 PS51273 "Reactome:REACT_1698" Glutamine amidotransferase type 1 domain profile. IPR017926

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting