Protein : Qrob_P0005090.2 Q. robur
Protein Identifier  ? Qrob_P0005090.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) KOG0263//KOG0266//KOG0271//KOG0272//KOG0276//KOG0279//KOG0292//KOG0295//KOG0319//KOG0974 - Transcription initiation factor TFIID subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]. // WD40 repeat-containing protein [General function prediction only]. // Notchless-like WD40 repeat-containing protein [Function unknown]. // U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]. // Vesicle coat complex COPI beta' subunit [Intracellular trafficking secretion and vesicular transport]. // G protein beta subunit-like protein [Signal transduction mechanisms]. // Vesicle coat complex COPI alpha subunit [Intracellular trafficking secretion and vesicular transport]. // WD40 repeat-containing protein [Function unknown]. // WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]. // WD-repeat protein WDR6 WD repeat superfamily [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 124  
Kegg Orthology  K14963
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Protein Sequence Displayer

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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101209956 12 112 + 101 Gaps:2 27.65 358 76.77 4e-43 WD repeat-containing protein 5-like
blastp_kegg lcl|cmo:103492662 12 112 + 101 Gaps:2 31.63 313 75.76 5e-43 WD repeat-containing protein 5
blastp_kegg lcl|pmum:103334133 12 112 + 101 Gaps:2 31.23 317 75.76 6e-43 WD repeat-containing protein 5
blastp_kegg lcl|pper:PRUPE_ppa008858mg 12 112 + 101 Gaps:2 31.23 317 75.76 6e-43 hypothetical protein
blastp_kegg lcl|fve:101299146 12 112 + 101 Gaps:2 31.13 318 72.73 9e-42 WD repeat-containing protein 5-like
blastp_kegg lcl|mdm:103432427 12 112 + 101 Gaps:2 31.53 314 74.75 1e-41 WD repeat-containing protein 5
blastp_kegg lcl|cam:101503930 12 112 + 101 Gaps:4 29.75 326 77.32 3e-41 WD repeat-containing protein 5-like
blastp_kegg lcl|rcu:RCOM_0557380 12 117 + 106 Gaps:3 32.39 318 71.84 7e-41 WD-repeat protein putative (EC:2.7.11.7)
blastp_kegg lcl|vvi:100249339 10 119 + 110 Gaps:17 76.51 315 52.28 1e-40 WD repeat-containing protein 5-like
blastp_kegg lcl|mtr:MTR_1g072140 10 119 + 110 Gaps:8 43.99 316 69.06 2e-40 WD repeat-containing protein
blastp_pdb 2gnq_A 12 112 + 101 Gaps:4 28.87 336 60.82 6e-30 mol:protein length:336 WD-repeat protein 5
blastp_pdb 2xl3_B 12 112 + 101 Gaps:4 29.04 334 60.82 7e-30 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl3_A 12 112 + 101 Gaps:4 29.04 334 60.82 7e-30 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_B 12 112 + 101 Gaps:4 29.04 334 60.82 7e-30 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 2xl2_A 12 112 + 101 Gaps:4 29.04 334 60.82 7e-30 mol:protein length:334 WD REPEAT-CONTAINING PROTEIN 5
blastp_pdb 3uvo_A 12 112 + 101 Gaps:4 30.50 318 60.82 8e-30 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 3uvn_C 12 112 + 101 Gaps:4 30.50 318 60.82 8e-30 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 3uvn_A 12 112 + 101 Gaps:4 30.50 318 60.82 8e-30 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 3uvm_A 12 112 + 101 Gaps:4 30.50 318 60.82 8e-30 mol:protein length:318 WD repeat-containing protein 5
blastp_pdb 3uvl_A 12 112 + 101 Gaps:4 30.50 318 60.82 8e-30 mol:protein length:318 WD repeat-containing protein 5
blastp_uniprot_sprot sp|Q54KL5|WDR5_DICDI 12 123 + 112 Gaps:11 57.61 335 50.78 6e-31 WD repeat-containing protein 5 homolog OS Dictyostelium discoideum GN wdr5 PE 3 SV 1
blastp_uniprot_sprot sp|Q498M4|WDR5_RAT 12 112 + 101 Gaps:4 29.04 334 60.82 3e-29 WD repeat-containing protein 5 OS Rattus norvegicus GN Wdr5 PE 2 SV 1
blastp_uniprot_sprot sp|P61965|WDR5_MOUSE 12 112 + 101 Gaps:4 29.04 334 60.82 3e-29 WD repeat-containing protein 5 OS Mus musculus GN Wdr5 PE 1 SV 1
blastp_uniprot_sprot sp|P61964|WDR5_HUMAN 12 112 + 101 Gaps:4 29.04 334 60.82 3e-29 WD repeat-containing protein 5 OS Homo sapiens GN WDR5 PE 1 SV 1
blastp_uniprot_sprot sp|Q2KIG2|WDR5_BOVIN 12 112 + 101 Gaps:4 29.04 334 60.82 3e-29 WD repeat-containing protein 5 OS Bos taurus GN WDR5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5M786|WDR5_XENTR 12 112 + 101 Gaps:4 29.04 334 60.82 3e-29 WD repeat-containing protein 5 OS Xenopus tropicalis GN wdr5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9V3J8|WDS_DROME 12 112 + 101 Gaps:4 26.87 361 57.73 7e-28 Protein will die slowly OS Drosophila melanogaster GN wds PE 2 SV 1
blastp_uniprot_sprot sp|Q5RE95|WDR5B_PONAB 12 112 + 101 Gaps:4 29.39 330 56.70 9e-27 WD repeat-containing protein 5B OS Pongo abelii PE 2 SV 1
blastp_uniprot_sprot sp|Q86VZ2|WDR5B_HUMAN 12 112 + 101 Gaps:4 29.39 330 56.70 9e-27 WD repeat-containing protein 5B OS Homo sapiens GN WDR5B PE 2 SV 1
blastp_uniprot_sprot sp|A8X8C6|TG125_CAEBR 12 117 + 106 Gaps:9 50.82 368 43.32 2e-26 WD repeat-containing protein tag-125 OS Caenorhabditis briggsae GN tag-125 PE 4 SV 1

15 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 53 67 15 PS00678 none Trp-Asp (WD) repeats signature. IPR019775
PANTHER 12 112 101 PTHR22847 none none none
Pfam 76 112 37 PF00400 none WD domain, G-beta repeat IPR001680
Pfam 31 66 36 PF00400 none WD domain, G-beta repeat IPR001680
ProSiteProfiles 1 121 121 PS50294 none Trp-Asp (WD) repeats circular profile. IPR017986
PANTHER 12 112 101 PTHR22847:SF308 none none none
Gene3D 9 118 110 G3DSA:2.130.10.10 none none IPR015943
ProSiteProfiles 80 112 33 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
SUPERFAMILY 9 115 107 SSF50978 none none IPR017986
ProSiteProfiles 34 75 42 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
PRINTS 99 113 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 11 25 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
PRINTS 53 67 15 PR00320 none G protein beta WD-40 repeat signature IPR020472
SMART 73 112 40 SM00320 none WD40 repeats IPR001680
SMART 27 66 40 SM00320 none WD40 repeats IPR001680

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting