Protein : Qrob_P0005020.2 Q. robur
Protein Identifier  ? Qrob_P0005020.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR23389:SF3 - CHROMOSOME TRANSMISSION FIDELITY PROTEIN 18 HOMOLOG (PTHR23389:SF3) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 472  
Kegg Orthology  K11269
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0 Synonyms

0 GO Terms

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103442062 5 471 + 467 Gaps:42 71.91 591 67.06 0.0 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|tcc:TCM_020368 5 471 + 467 Gaps:40 45.40 945 70.40 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein putative
blastp_kegg lcl|cit:102627504 5 460 + 456 Gaps:40 43.88 948 69.23 0.0 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pxb:103936985 5 471 + 467 Gaps:42 43.81 970 67.53 0.0 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|vvi:100244400 5 471 + 467 Gaps:46 44.41 948 66.98 0.0 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pmum:103330409 5 471 + 467 Gaps:47 40.70 1032 67.62 3e-178 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pop:POPTR_0001s14450g 5 471 + 467 Gaps:61 41.77 972 68.72 1e-173 POPTRDRAFT_178937 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10006732mg 15 426 + 412 Gaps:40 99.47 374 69.35 6e-172 hypothetical protein
blastp_kegg lcl|fve:101294066 5 471 + 467 Gaps:40 40.71 1049 64.17 1e-170 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pper:PRUPE_ppa006249mg 15 424 + 410 Gaps:45 86.90 420 69.04 1e-167 hypothetical protein
blastp_uniprot_sprot sp|Q6NU40|CTF18_XENLA 5 371 + 367 Gaps:77 34.00 1000 31.47 1e-29 Chromosome transmission fidelity protein 18 homolog OS Xenopus laevis GN chtf18 PE 2 SV 1
blastp_uniprot_sprot sp|Q8BIW9|CTF18_MOUSE 5 384 + 380 Gaps:73 36.02 969 32.09 3e-29 Chromosome transmission fidelity protein 18 homolog OS Mus musculus GN Chtf18 PE 2 SV 2
blastp_uniprot_sprot sp|Q8WVB6|CTF18_HUMAN 5 385 + 381 Gaps:75 35.90 975 30.00 5e-28 Chromosome transmission fidelity protein 18 homolog OS Homo sapiens GN CHTF18 PE 1 SV 1
rpsblast_kog gnl|CDD|37180 5 420 + 416 Gaps:76 42.19 877 27.30 1e-58 KOG1969 KOG1969 KOG1969 DNA replication checkpoint protein CHL12/CTF18 [Energy production and conversion Replication recombination and repair].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 5 52 48 G3DSA:1.10.8.60 none none none
PANTHER 5 46 42 PTHR23389:SF3 none none none
PANTHER 92 382 291 PTHR23389 none none none
Phobius 1 31 31 SIGNAL_PEPTIDE none Signal peptide region none
Phobius 1 17 17 SIGNAL_PEPTIDE_N_REGION none N-terminal region of a signal peptide. none
Phobius 18 26 9 SIGNAL_PEPTIDE_H_REGION none Hydrophobic region of a signal peptide. none
PANTHER 5 46 42 PTHR23389 none none none
PANTHER 92 382 291 PTHR23389:SF3 none none none
Phobius 27 31 5 SIGNAL_PEPTIDE_C_REGION none C-terminal region of a signal peptide. none
Phobius 32 471 440 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting