Protein : Qrob_P0005010.2 Q. robur
Protein Identifier  ? Qrob_P0005010.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=1) PTHR13779:SF25 - HOLLIDAY JUNCTION ATP-DEPENDENT DNA HELICASE RUVB (PTHR13779:SF25) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 321  
Kegg Orthology  K11269
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1020420 17 320 + 304 none 37.39 813 80.92 2e-169 chromosome transmission fidelity factor putative
blastp_kegg lcl|cit:102627504 17 320 + 304 none 32.07 948 80.92 1e-165 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pop:POPTR_0001s14450g 17 320 + 304 Gaps:26 33.95 972 74.85 1e-164 POPTRDRAFT_178937 hypothetical protein
blastp_kegg lcl|tcc:TCM_020368 17 320 + 304 Gaps:10 31.11 945 82.99 4e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein putative
blastp_kegg lcl|cic:CICLE_v10006428mg 17 320 + 304 Gaps:14 66.11 481 75.47 1e-161 hypothetical protein
blastp_kegg lcl|vvi:100244400 17 320 + 304 none 32.07 948 78.62 6e-160 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|fve:101294066 17 320 + 304 Gaps:10 28.41 1049 78.19 2e-152 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pper:PRUPE_ppa005078mg 18 320 + 303 Gaps:9 64.85 478 72.90 3e-152 hypothetical protein
blastp_kegg lcl|gmx:100785041 17 320 + 304 Gaps:3 31.27 969 75.58 6e-152 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|gmx:100791474 17 320 + 304 Gaps:3 31.50 962 73.93 6e-148 chromosome transmission fidelity protein 18 homolog
blastp_pdb 1sxj_A 180 318 + 139 Gaps:41 23.26 516 36.67 4e-12 mol:protein length:516 Activator 1 95 kDa subunit
blastp_uniprot_sprot sp|Q6NU40|CTF18_XENLA 63 319 + 257 Gaps:41 22.40 1000 47.77 4e-45 Chromosome transmission fidelity protein 18 homolog OS Xenopus laevis GN chtf18 PE 2 SV 1
blastp_uniprot_sprot sp|Q8WVB6|CTF18_HUMAN 63 319 + 257 Gaps:34 23.08 975 46.22 1e-40 Chromosome transmission fidelity protein 18 homolog OS Homo sapiens GN CHTF18 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BIW9|CTF18_MOUSE 63 319 + 257 Gaps:39 23.12 969 45.98 3e-38 Chromosome transmission fidelity protein 18 homolog OS Mus musculus GN Chtf18 PE 2 SV 2
blastp_uniprot_sprot sp|Q9USQ1|CTF18_SCHPO 61 320 + 260 Gaps:62 20.62 960 43.94 4e-34 Chromosome transmission fidelity protein 18 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ctf18 PE 1 SV 1
blastp_uniprot_sprot sp|P49956|CTF18_YEAST 25 316 + 292 Gaps:67 30.63 741 41.41 8e-32 Chromosome transmission fidelity protein 18 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN CTF18 PE 1 SV 1
blastp_uniprot_sprot sp|P0C1D3|CTF18_EMENI 63 317 + 255 Gaps:69 21.15 993 40.95 1e-24 Chromosome transmission fidelity protein 18 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN ctf18 PE 3 SV 1
blastp_uniprot_sprot sp|O60182|RFC1_SCHPO 176 315 + 140 Gaps:43 12.96 934 44.63 3e-15 Replication factor C subunit 1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rfc1 PE 1 SV 1
blastp_uniprot_sprot sp|P35251|RFC1_HUMAN 59 315 + 257 Gaps:100 15.94 1148 37.16 6e-15 Replication factor C subunit 1 OS Homo sapiens GN RFC1 PE 1 SV 4
blastp_uniprot_sprot sp|A1RWU6|RFCL_THEPD 167 318 + 152 Gaps:32 29.54 413 38.52 3e-14 Replication factor C large subunit OS Thermofilum pendens (strain Hrk 5) GN rfcL PE 3 SV 1
blastp_uniprot_sprot sp|P35601|RFC1_MOUSE 63 315 + 253 Gaps:100 15.83 1131 35.20 1e-13 Replication factor C subunit 1 OS Mus musculus GN Rfc1 PE 1 SV 2
rpsblast_cdd gnl|CDD|179778 162 320 + 159 Gaps:44 25.52 482 41.46 4e-17 PRK04195 PRK04195 replication factor C large subunit Provisional.
rpsblast_cdd gnl|CDD|200921 179 266 + 88 Gaps:5 66.41 131 33.33 6e-13 pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly operation or disassembly of protein complexes.
rpsblast_cdd gnl|CDD|99707 174 259 + 86 Gaps:5 60.26 151 32.97 1e-12 cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC RecA-like VirD4-like PilT-like and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons ATPase subunits of proteases helicases or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases..
rpsblast_cdd gnl|CDD|197690 176 316 + 141 Gaps:39 90.54 148 20.90 6e-08 smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
rpsblast_cdd gnl|CDD|73174 176 316 + 141 Gaps:57 41.23 325 26.12 3e-07 COG0470 HolB ATPase involved in DNA replication [DNA replication recombination and repair].
rpsblast_cdd gnl|CDD|183986 179 245 + 67 Gaps:6 15.25 413 30.16 6e-07 PRK13342 PRK13342 recombination factor protein RarA Reviewed.
rpsblast_kog gnl|CDD|37180 24 320 + 297 Gaps:59 27.37 877 50.00 1e-70 KOG1969 KOG1969 KOG1969 DNA replication checkpoint protein CHL12/CTF18 [Energy production and conversion Replication recombination and repair].
rpsblast_kog gnl|CDD|37179 163 319 + 157 Gaps:43 15.61 871 38.97 1e-11 KOG1968 KOG1968 KOG1968 Replication factor C subunit RFC1 (large subunit) [Replication recombination and repair].

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 171 318 148 G3DSA:3.40.50.300 none none IPR027417
SMART 175 319 145 SM00382 none ATPases associated with a variety of cellular activities IPR003593
PANTHER 179 320 142 PTHR13779:SF25 none none none
PANTHER 179 320 142 PTHR13779 none none none
Pfam 179 260 82 PF00004 none ATPase family associated with various cellular activities (AAA) IPR003959
PANTHER 17 121 105 PTHR13779 none none none
PANTHER 17 121 105 PTHR13779:SF25 none none none
SUPERFAMILY 174 268 95 SSF52540 none none IPR027417
SUPERFAMILY 61 97 37 SSF52540 none none IPR027417
SUPERFAMILY 298 308 11 SSF52540 none none IPR027417

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 18   Secretory pathway 2 0.817 0.032 NON-PLANT 18