Protein : Qrob_P0005000.2 Q. robur
Protein Identifier  ? Qrob_P0005000.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=8) KOG1969 - DNA replication checkpoint protein CHL12/CTF18 [Energy production and conversion Replication recombination and repair]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 202  
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0 Synonyms

0 GO Terms

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa005078mg 3 175 + 173 Gaps:11 35.98 478 58.72 1e-44 hypothetical protein
blastp_kegg lcl|pmum:103330409 3 175 + 173 Gaps:15 23.35 1032 57.26 5e-44 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pxb:103936985 3 175 + 173 Gaps:17 18.14 970 55.11 6e-39 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|mdm:103442700 3 175 + 173 Gaps:17 46.68 377 55.11 2e-37 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|rcu:RCOM_1020420 3 175 + 173 Gaps:13 21.16 813 54.07 2e-32 chromosome transmission fidelity factor putative
blastp_kegg lcl|gmx:100785041 2 165 + 164 Gaps:29 17.44 969 48.52 3e-32 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pop:POPTR_0001s14450g 3 175 + 173 Gaps:28 18.00 972 53.14 5e-29 POPTRDRAFT_178937 hypothetical protein
blastp_kegg lcl|vvi:100244400 1 176 + 176 Gaps:20 17.30 948 50.61 5e-28 chromosome transmission fidelity protein 18 homolog
blastp_kegg lcl|pvu:PHAVU_007G2358000 2 172 + 171 Gaps:37 93.33 180 46.43 6e-28 hypothetical protein
blastp_kegg lcl|gmx:100791474 2 165 + 164 Gaps:27 16.94 962 48.47 3e-27 chromosome transmission fidelity protein 18 homolog
rpsblast_kog gnl|CDD|37180 2 174 + 173 Gaps:35 23.26 877 15.69 1e-08 KOG1969 KOG1969 KOG1969 DNA replication checkpoint protein CHL12/CTF18 [Energy production and conversion Replication recombination and repair].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 175 196 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 197 201 5 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1 174 174 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting