Protein : Qrob_P0004940.2 Q. robur
Protein Identifier  ? Qrob_P0004940.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=15) PTHR23083 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Gene Prediction Quality  validated
Protein length 

Sequence

Length: 302  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

10 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103323704 3 301 + 299 none 100.00 299 80.27 6e-178 uncharacterized LOC103323704
blastp_kegg lcl|fve:101302454 12 301 + 290 Gaps:1 98.31 296 82.47 1e-177 uncharacterized protein LOC101302454
blastp_kegg lcl|pper:PRUPE_ppa009277mg 21 301 + 281 none 93.98 299 83.63 9e-177 hypothetical protein
blastp_kegg lcl|pxb:103952210 21 301 + 281 none 93.36 301 84.34 4e-174 uncharacterized LOC103952210
blastp_kegg lcl|tcc:TCM_020375 5 301 + 297 none 100.00 297 78.11 3e-173 Tetratricopeptide repeat-like superfamily protein
blastp_kegg lcl|mdm:103453653 23 301 + 279 none 93.31 299 83.87 4e-172 uncharacterized LOC103453653
blastp_kegg lcl|rcu:RCOM_1020440 5 301 + 297 Gaps:3 100.00 296 79.73 2e-171 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s17610g 22 301 + 280 none 96.22 291 80.71 7e-170 POPTRDRAFT_554834 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10005365mg 6 301 + 296 Gaps:2 88.17 338 77.52 3e-169 hypothetical protein
blastp_kegg lcl|cit:102628382 22 301 + 280 none 97.56 287 80.36 1e-168 hypothetical protein

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 163 196 34 PS50293 none TPR repeat region circular profile. IPR013026
SUPERFAMILY 45 102 58 SSF48452 none none none
SUPERFAMILY 165 224 60 SSF48452 none none none
ProSiteProfiles 163 196 34 PS50005 none TPR repeat profile. IPR019734
PANTHER 36 224 189 PTHR23083 none none none
Coils 76 97 22 Coil none none none
Gene3D 45 238 194 G3DSA:1.25.40.10 none none IPR011990
Pfam 164 195 32 PF00515 none Tetratricopeptide repeat IPR001440
Coils 109 130 22 Coil none none none
SMART 163 196 34 SM00028 none Tetratricopeptide repeats IPR019734

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2002_QTL11_peak_Bud_burst_A4 Qrob_Chr06 6 s_1C41PA_791 s_1AM1AV_1141 19,17 0 34,57 lod 2,3 2,9
Bourran2_2014_aSeqBC_3P Qrob_Chr06 6 v_506_189 v_686_77 30,72 13,58 43,48 lod 2,2746 6,3
Bourran2_2014_aSeqBC*_A4 Qrob_Chr06 6 s_2F5MK3_712 v_444_355 27,13 14,86 39,46 lod 3,7847 9,8
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_nLBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,41 9,8 50,1 lod 1,9524 4,1
Bourran2_2014_nPriBD_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,51 3,36 51,86 lod 1,6747 3,9
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_vEpiBC_A4 Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 37,55 14,41 50,01 lod 1,7882 4,8
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Champenoux_2015_nP_3P Qrob_Chr06 6 s_1A386O_228 s_1AYZFS_603 27,03 26,47 27,34 lod 2.8 7.2

0 Targeting